miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 5875 0.67 0.852826
Target:  5'- cGUGCAUGCGCGCGgcgcaagauggccugUUUCCGgauggccgCGAg -3'
miRNA:   3'- -CGCGUGCGCGCGUa--------------GAAGGUaua-----GCU- -5'
24003 3' -52.5 NC_005262.1 + 39728 0.67 0.851976
Target:  5'- cGCGCagcagGCGCaGCGCAUCaaccCCAacuggAUCGAc -3'
miRNA:   3'- -CGCG-----UGCG-CGCGUAGaa--GGUa----UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 12524 0.67 0.851976
Target:  5'- cCGCGCGaCGCG-AUCgccUCCAUGUUGc -3'
miRNA:   3'- cGCGUGC-GCGCgUAGa--AGGUAUAGCu -5'
24003 3' -52.5 NC_005262.1 + 50350 0.67 0.851976
Target:  5'- gGCGCGgGCGCGCccUCgUUgCGgcgGUCGAu -3'
miRNA:   3'- -CGCGUgCGCGCGu-AG-AAgGUa--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 43875 0.67 0.851976
Target:  5'- gGCGCGauCGCGCGCAUgg-CCGacaugaaGUCGAa -3'
miRNA:   3'- -CGCGU--GCGCGCGUAgaaGGUa------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 12022 0.67 0.843339
Target:  5'- -aGCGCGUGCGCcAUgUUCCcgA-CGAu -3'
miRNA:   3'- cgCGUGCGCGCG-UAgAAGGuaUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 48117 0.67 0.843339
Target:  5'- cGCGC-CGCGCGCAagagCU-CgGcGUCGAu -3'
miRNA:   3'- -CGCGuGCGCGCGUa---GAaGgUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 62029 0.67 0.843339
Target:  5'- uCGC-CGCGCGCgAUCcUCCuccUCGAu -3'
miRNA:   3'- cGCGuGCGCGCG-UAGaAGGuauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 24731 0.67 0.843339
Target:  5'- cGCGCugGCGCGCGcgaUCgg-CGUG-CGGc -3'
miRNA:   3'- -CGCGugCGCGCGU---AGaagGUAUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 50483 0.67 0.834478
Target:  5'- gGCGCugaucgcCGCGCGguUCgcgucgCCAcgGUCGAc -3'
miRNA:   3'- -CGCGu------GCGCGCguAGaa----GGUa-UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 48192 0.67 0.834478
Target:  5'- uGCGCGCG-GCGCGUCacaUCAUcgcgcGUCGGc -3'
miRNA:   3'- -CGCGUGCgCGCGUAGaa-GGUA-----UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33296 0.67 0.8254
Target:  5'- cGCGCACGCcggGCGCcgaagCCGUcgaGUCGGa -3'
miRNA:   3'- -CGCGUGCG---CGCGuagaaGGUA---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 23572 0.67 0.8254
Target:  5'- cGCGCGCGgGCGCAggagaucgCCGUGaaaacCGAg -3'
miRNA:   3'- -CGCGUGCgCGCGUagaa----GGUAUa----GCU- -5'
24003 3' -52.5 NC_005262.1 + 54921 0.67 0.8254
Target:  5'- -gGCGCGCuGCGUGUCggUCCAauccAUCGGc -3'
miRNA:   3'- cgCGUGCG-CGCGUAGa-AGGUa---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 49458 0.68 0.816117
Target:  5'- gGUGaugaACGCGCGCGUCg-CCGaGUCGu -3'
miRNA:   3'- -CGCg---UGCGCGCGUAGaaGGUaUAGCu -5'
24003 3' -52.5 NC_005262.1 + 43528 0.68 0.816117
Target:  5'- cCGCACaaGCGCGUCg-CCGUcgAUCGGa -3'
miRNA:   3'- cGCGUGcgCGCGUAGaaGGUA--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 28168 0.68 0.806637
Target:  5'- gGCGCAacUGCGCGCggCggCC--GUCGAc -3'
miRNA:   3'- -CGCGU--GCGCGCGuaGaaGGuaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 30832 0.68 0.806637
Target:  5'- cGCGUcucgGCGaCGCGCAUCgUCgAcGUCGGg -3'
miRNA:   3'- -CGCG----UGC-GCGCGUAGaAGgUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33880 0.68 0.805679
Target:  5'- cGCGCGCGagacgauCGUGCGUCggCCGgcggcccgAUCGGu -3'
miRNA:   3'- -CGCGUGC-------GCGCGUAGaaGGUa-------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 43920 0.68 0.796972
Target:  5'- cCGC-CGCGCGCGgccggcccgCggCCGUGUCGc -3'
miRNA:   3'- cGCGuGCGCGCGUa--------GaaGGUAUAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.