Results 61 - 76 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24003 | 3' | -52.5 | NC_005262.1 | + | 15666 | 0.71 | 0.637462 |
Target: 5'- cGCGCGCGCGCGCc---UCCAgcUCc- -3' miRNA: 3'- -CGCGUGCGCGCGuagaAGGUauAGcu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 22998 | 0.72 | 0.593192 |
Target: 5'- gGCGaGCGCGUaGCAgUCUUCCGcgAUCGAg -3' miRNA: 3'- -CGCgUGCGCG-CGU-AGAAGGUa-UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 25020 | 0.72 | 0.582185 |
Target: 5'- cGCGCggccAUGUGCGCAUCccgCCAUGccUCGGc -3' miRNA: 3'- -CGCG----UGCGCGCGUAGaa-GGUAU--AGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 3174 | 0.72 | 0.538661 |
Target: 5'- uGCGCAggucgccaauCGCGCGCAUCU----UGUCGAa -3' miRNA: 3'- -CGCGU----------GCGCGCGUAGAagguAUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 33249 | 0.73 | 0.517308 |
Target: 5'- cGCGCACGuCGaGCG-CUUCC-UGUCGAu -3' miRNA: 3'- -CGCGUGC-GCgCGUaGAAGGuAUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 13465 | 0.73 | 0.516249 |
Target: 5'- uGCGCGCGCccagGCGCAggaUUCCGUGcuggcgcagcgcuUCGAg -3' miRNA: 3'- -CGCGUGCG----CGCGUag-AAGGUAU-------------AGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 12733 | 0.73 | 0.496301 |
Target: 5'- cGCGcCGCGCGCGCuUCUUCUucacgGUGcCGAg -3' miRNA: 3'- -CGC-GUGCGCGCGuAGAAGG-----UAUaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 10340 | 0.74 | 0.445597 |
Target: 5'- uGCGCAaGgGCGCAUCUgUCUAcAUCGAg -3' miRNA: 3'- -CGCGUgCgCGCGUAGA-AGGUaUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 62945 | 0.74 | 0.445597 |
Target: 5'- aGCGCgauuuGCGCGCGUcgCUUCCGgc-CGAc -3' miRNA: 3'- -CGCG-----UGCGCGCGuaGAAGGUauaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 15972 | 0.75 | 0.397919 |
Target: 5'- cGCGCACGCgGCGgAUCagcgCCAUcgcGUCGAg -3' miRNA: 3'- -CGCGUGCG-CGCgUAGaa--GGUA---UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 54887 | 0.76 | 0.370929 |
Target: 5'- aCGC-CGCGCGCAUCUUCUGcg-CGAc -3' miRNA: 3'- cGCGuGCGCGCGUAGAAGGUauaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 61693 | 0.76 | 0.345215 |
Target: 5'- -gGCGCGCGCGCuUCUgCUcgGUCGAg -3' miRNA: 3'- cgCGUGCGCGCGuAGAaGGuaUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 4555 | 0.78 | 0.283046 |
Target: 5'- uGCGCGCGCgGCGCAUCUcgcgCCAg--CGGc -3' miRNA: 3'- -CGCGUGCG-CGCGUAGAa---GGUauaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 63403 | 0.8 | 0.212482 |
Target: 5'- gGCGaCGCgGCGCGCGUgUUCCAcGUCGAc -3' miRNA: 3'- -CGC-GUG-CGCGCGUAgAAGGUaUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 34132 | 0.81 | 0.19083 |
Target: 5'- cGCGCAC-CGCGCAUCUUCUAcGUCu- -3' miRNA: 3'- -CGCGUGcGCGCGUAGAAGGUaUAGcu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 20784 | 1.12 | 0.001466 |
Target: 5'- cGCGCACGCGCGCAUCUUCCAUAUCGAg -3' miRNA: 3'- -CGCGUGCGCGCGUAGAAGGUAUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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