miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 3174 0.72 0.538661
Target:  5'- uGCGCAggucgccaauCGCGCGCAUCU----UGUCGAa -3'
miRNA:   3'- -CGCGU----------GCGCGCGUAGAagguAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 4555 0.78 0.283046
Target:  5'- uGCGCGCGCgGCGCAUCUcgcgCCAg--CGGc -3'
miRNA:   3'- -CGCGUGCG-CGCGUAGAa---GGUauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 5794 0.66 0.868539
Target:  5'- uGCGC-CGCGCGCAUgcaCgcgUUCAUGagGGa -3'
miRNA:   3'- -CGCGuGCGCGCGUA---Ga--AGGUAUagCU- -5'
24003 3' -52.5 NC_005262.1 + 5875 0.67 0.852826
Target:  5'- cGUGCAUGCGCGCGgcgcaagauggccugUUUCCGgauggccgCGAg -3'
miRNA:   3'- -CGCGUGCGCGCGUa--------------GAAGGUaua-----GCU- -5'
24003 3' -52.5 NC_005262.1 + 6246 0.66 0.884107
Target:  5'- cCGC-CGCGCGCAcggUCUuugCCGccUCGAu -3'
miRNA:   3'- cGCGuGCGCGCGU---AGAa--GGUauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 10340 0.74 0.445597
Target:  5'- uGCGCAaGgGCGCAUCUgUCUAcAUCGAg -3'
miRNA:   3'- -CGCGUgCgCGCGUAGA-AGGUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 10949 0.66 0.884107
Target:  5'- cGCGCuACGCGCaGCAggcaUUCgCGcUGUCGGc -3'
miRNA:   3'- -CGCG-UGCGCG-CGUag--AAG-GU-AUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 12022 0.67 0.843339
Target:  5'- -aGCGCGUGCGCcAUgUUCCcgA-CGAu -3'
miRNA:   3'- cgCGUGCGCGCG-UAgAAGGuaUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 12524 0.67 0.851976
Target:  5'- cCGCGCGaCGCG-AUCgccUCCAUGUUGc -3'
miRNA:   3'- cGCGUGC-GCGCgUAGa--AGGUAUAGCu -5'
24003 3' -52.5 NC_005262.1 + 12733 0.73 0.496301
Target:  5'- cGCGcCGCGCGCGCuUCUUCUucacgGUGcCGAg -3'
miRNA:   3'- -CGC-GUGCGCGCGuAGAAGG-----UAUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 13006 0.66 0.891501
Target:  5'- aGCGCGC-CGCGCAgguugUCGUGUCc- -3'
miRNA:   3'- -CGCGUGcGCGCGUagaa-GGUAUAGcu -5'
24003 3' -52.5 NC_005262.1 + 13227 0.66 0.898628
Target:  5'- cGCGCAgCGCGCGCGgcggaccuaaUUgugCCAcgguUCGAa -3'
miRNA:   3'- -CGCGU-GCGCGCGU----------AGaa-GGUau--AGCU- -5'
24003 3' -52.5 NC_005262.1 + 13385 0.68 0.787133
Target:  5'- uGCGCcuggGCGCGCGCAUCcacgagcUCCg---CGAg -3'
miRNA:   3'- -CGCG----UGCGCGCGUAGa------AGGuauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 13465 0.73 0.516249
Target:  5'- uGCGCGCGCccagGCGCAggaUUCCGUGcuggcgcagcgcuUCGAg -3'
miRNA:   3'- -CGCGUGCG----CGCGUag-AAGGUAU-------------AGCU- -5'
24003 3' -52.5 NC_005262.1 + 13556 0.69 0.756678
Target:  5'- cGCGCgACGCGCGCGggCUUCgCGcccuugCGAc -3'
miRNA:   3'- -CGCG-UGCGCGCGUa-GAAG-GUaua---GCU- -5'
24003 3' -52.5 NC_005262.1 + 13768 0.69 0.713241
Target:  5'- cGCGCcagcaccGCGCGCGUgAUCUUCguCAUGUCu- -3'
miRNA:   3'- -CGCG-------UGCGCGCG-UAGAAG--GUAUAGcu -5'
24003 3' -52.5 NC_005262.1 + 15590 0.68 0.787133
Target:  5'- gGCGCGCGCGCGCGaggagCgCGUG-CGGc -3'
miRNA:   3'- -CGCGUGCGCGCGUagaa-G-GUAUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 15666 0.71 0.637462
Target:  5'- cGCGCGCGCGCGCc---UCCAgcUCc- -3'
miRNA:   3'- -CGCGUGCGCGCGuagaAGGUauAGcu -5'
24003 3' -52.5 NC_005262.1 + 15787 0.66 0.884107
Target:  5'- aGCGCAUaGCGCuGC-UCgUCCGUcUCGGc -3'
miRNA:   3'- -CGCGUG-CGCG-CGuAGaAGGUAuAGCU- -5'
24003 3' -52.5 NC_005262.1 + 15972 0.75 0.397919
Target:  5'- cGCGCACGCgGCGgAUCagcgCCAUcgcGUCGAg -3'
miRNA:   3'- -CGCGUGCG-CGCgUAGaa--GGUA---UAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.