miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 17220 0.66 0.891501
Target:  5'- uGCG-ACGCGCGCGUUcuuguggUCCAUcgCc- -3'
miRNA:   3'- -CGCgUGCGCGCGUAGa------AGGUAuaGcu -5'
24003 3' -52.5 NC_005262.1 + 17490 0.68 0.787133
Target:  5'- aGCGCGCGcCGCGCG-Cga-CGcGUCGAu -3'
miRNA:   3'- -CGCGUGC-GCGCGUaGaagGUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 17567 0.69 0.746252
Target:  5'- cGCGCgGCGCGCGCuUCgUCCuggaacUCGGc -3'
miRNA:   3'- -CGCG-UGCGCGCGuAGaAGGuau---AGCU- -5'
24003 3' -52.5 NC_005262.1 + 20784 1.12 0.001466
Target:  5'- cGCGCACGCGCGCAUCUUCCAUAUCGAg -3'
miRNA:   3'- -CGCGUGCGCGCGUAGAAGGUAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 20860 0.69 0.756678
Target:  5'- uGCGCGCGUGCGCgAUCU--CGUGgcgcugggguUCGAc -3'
miRNA:   3'- -CGCGUGCGCGCG-UAGAagGUAU----------AGCU- -5'
24003 3' -52.5 NC_005262.1 + 21833 0.69 0.73571
Target:  5'- cGUGC-CGCuGCGCgAUCUUCCGUGagcgccUUGAg -3'
miRNA:   3'- -CGCGuGCG-CGCG-UAGAAGGUAU------AGCU- -5'
24003 3' -52.5 NC_005262.1 + 22998 0.72 0.593192
Target:  5'- gGCGaGCGCGUaGCAgUCUUCCGcgAUCGAg -3'
miRNA:   3'- -CGCgUGCGCG-CGU-AGAAGGUa-UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 23441 0.66 0.884107
Target:  5'- cCGC-CGCGCGCuUCacgCCGgccgugGUCGAg -3'
miRNA:   3'- cGCGuGCGCGCGuAGaa-GGUa-----UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 23572 0.67 0.8254
Target:  5'- cGCGCGCGgGCGCAggagaucgCCGUGaaaacCGAg -3'
miRNA:   3'- -CGCGUGCgCGCGUagaa----GGUAUa----GCU- -5'
24003 3' -52.5 NC_005262.1 + 23687 0.68 0.787133
Target:  5'- aGCgGCGCGUGUGgGUCUaCCGgcgcacgGUCGAc -3'
miRNA:   3'- -CG-CGUGCGCGCgUAGAaGGUa------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 24731 0.67 0.843339
Target:  5'- cGCGCugGCGCGCGcgaUCgg-CGUG-CGGc -3'
miRNA:   3'- -CGCGugCGCGCGU---AGaagGUAUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 25020 0.72 0.582185
Target:  5'- cGCGCggccAUGUGCGCAUCccgCCAUGccUCGGc -3'
miRNA:   3'- -CGCG----UGCGCGCGUAGaa-GGUAU--AGCU- -5'
24003 3' -52.5 NC_005262.1 + 26648 0.69 0.725062
Target:  5'- uGCGCgaacugGCGCaGCGCGUCggCCGcuUCGGa -3'
miRNA:   3'- -CGCG------UGCG-CGCGUAGaaGGUauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 28168 0.68 0.806637
Target:  5'- gGCGCAacUGCGCGCggCggCC--GUCGAc -3'
miRNA:   3'- -CGCGU--GCGCGCGuaGaaGGuaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 28422 0.69 0.746252
Target:  5'- cGCuGCACGCGCacggGCAUCcggaaCCAUGccUCGAu -3'
miRNA:   3'- -CG-CGUGCGCG----CGUAGaa---GGUAU--AGCU- -5'
24003 3' -52.5 NC_005262.1 + 30832 0.68 0.806637
Target:  5'- cGCGUcucgGCGaCGCGCAUCgUCgAcGUCGGg -3'
miRNA:   3'- -CGCG----UGC-GCGCGUAGaAGgUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 31852 0.66 0.868539
Target:  5'- gGUGCACGCG-GCAUCaaCCucgacuucAUCGAa -3'
miRNA:   3'- -CGCGUGCGCgCGUAGaaGGua------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33249 0.73 0.517308
Target:  5'- cGCGCACGuCGaGCG-CUUCC-UGUCGAu -3'
miRNA:   3'- -CGCGUGC-GCgCGUaGAAGGuAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33296 0.67 0.8254
Target:  5'- cGCGCACGCcggGCGCcgaagCCGUcgaGUCGGa -3'
miRNA:   3'- -CGCGUGCG---CGCGuagaaGGUA---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33328 0.68 0.777129
Target:  5'- aGCGCucgACGUGCGCGUCgaugUUgAcGUCGGc -3'
miRNA:   3'- -CGCG---UGCGCGCGUAGa---AGgUaUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.