miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 33880 0.68 0.805679
Target:  5'- cGCGCGCGagacgauCGUGCGUCggCCGgcggcccgAUCGGu -3'
miRNA:   3'- -CGCGUGC-------GCGCGUAGaaGGUa-------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33950 0.7 0.692601
Target:  5'- uCGCGCGCGCGUcgUUgaUCCAc-UCGAu -3'
miRNA:   3'- cGCGUGCGCGCGuaGA--AGGUauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 34132 0.81 0.19083
Target:  5'- cGCGCAC-CGCGCAUCUUCUAcGUCu- -3'
miRNA:   3'- -CGCGUGcGCGCGUAGAAGGUaUAGcu -5'
24003 3' -52.5 NC_005262.1 + 34161 0.66 0.884107
Target:  5'- cGCGCGCGCG-GCGUgCcagUCCGgguucuggucGUCGAg -3'
miRNA:   3'- -CGCGUGCGCgCGUA-Ga--AGGUa---------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 35462 0.66 0.898628
Target:  5'- aGCGcCGCGUGCGCcagcauaUUUCCGccgGUCGGu -3'
miRNA:   3'- -CGC-GUGCGCGCGua-----GAAGGUa--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 35871 0.69 0.732526
Target:  5'- uGCGCggcgACGCGCGCAccuaucggcUCaUCCAcggggccggcacagUGUCGAu -3'
miRNA:   3'- -CGCG----UGCGCGCGU---------AGaAGGU--------------AUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 35948 0.69 0.756678
Target:  5'- cGCGCGuCGCGCGCAcaaacaUCUgggCgGUcgCGGc -3'
miRNA:   3'- -CGCGU-GCGCGCGU------AGAa--GgUAuaGCU- -5'
24003 3' -52.5 NC_005262.1 + 36219 0.69 0.746252
Target:  5'- cGCGCugGCgGUGC-UCgccucgCCGUAUCGc -3'
miRNA:   3'- -CGCGugCG-CGCGuAGaa----GGUAUAGCu -5'
24003 3' -52.5 NC_005262.1 + 36465 0.66 0.876451
Target:  5'- gGCGCauggGCGCGCGCGaggCUggcggaCAUcgCGAa -3'
miRNA:   3'- -CGCG----UGCGCGCGUa--GAag----GUAuaGCU- -5'
24003 3' -52.5 NC_005262.1 + 38027 0.66 0.891501
Target:  5'- gGCGUugGCGuCGCGg--UCCAUG-CGc -3'
miRNA:   3'- -CGCGugCGC-GCGUagaAGGUAUaGCu -5'
24003 3' -52.5 NC_005262.1 + 39728 0.67 0.851976
Target:  5'- cGCGCagcagGCGCaGCGCAUCaaccCCAacuggAUCGAc -3'
miRNA:   3'- -CGCG-----UGCG-CGCGUAGaa--GGUa----UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 39914 0.67 0.860378
Target:  5'- cUGCuggauCGCGCGCAUCgcgUCCA--UCa- -3'
miRNA:   3'- cGCGu----GCGCGCGUAGa--AGGUauAGcu -5'
24003 3' -52.5 NC_005262.1 + 43528 0.68 0.816117
Target:  5'- cCGCACaaGCGCGUCg-CCGUcgAUCGGa -3'
miRNA:   3'- cGCGUGcgCGCGUAGaaGGUA--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 43875 0.67 0.851976
Target:  5'- gGCGCGauCGCGCGCAUgg-CCGacaugaaGUCGAa -3'
miRNA:   3'- -CGCGU--GCGCGCGUAgaaGGUa------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 43920 0.68 0.796972
Target:  5'- cCGC-CGCGCGCGgccggcccgCggCCGUGUCGc -3'
miRNA:   3'- cGCGuGCGCGCGUa--------GaaGGUAUAGCu -5'
24003 3' -52.5 NC_005262.1 + 44243 0.69 0.73571
Target:  5'- cGCGCuccugcccgaucGCGCGCGCGUCcggCCGgaacgCGGg -3'
miRNA:   3'- -CGCG------------UGCGCGCGUAGaa-GGUaua--GCU- -5'
24003 3' -52.5 NC_005262.1 + 45675 0.67 0.856207
Target:  5'- aGCGCAuggugccgcacuuCGUGCGCAUCgagggCCGgcagccggccgugAUCGAg -3'
miRNA:   3'- -CGCGU-------------GCGCGCGUAGaa---GGUa------------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 48117 0.67 0.843339
Target:  5'- cGCGC-CGCGCGCAagagCU-CgGcGUCGAu -3'
miRNA:   3'- -CGCGuGCGCGCGUa---GAaGgUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 48192 0.67 0.834478
Target:  5'- uGCGCGCG-GCGCGUCacaUCAUcgcgcGUCGGc -3'
miRNA:   3'- -CGCGUGCgCGCGUAGaa-GGUA-----UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 49458 0.68 0.816117
Target:  5'- gGUGaugaACGCGCGCGUCg-CCGaGUCGu -3'
miRNA:   3'- -CGCg---UGCGCGCGUAGaaGGUaUAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.