miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 63403 0.8 0.212482
Target:  5'- gGCGaCGCgGCGCGCGUgUUCCAcGUCGAc -3'
miRNA:   3'- -CGC-GUG-CGCGCGUAgAAGGUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 62945 0.74 0.445597
Target:  5'- aGCGCgauuuGCGCGCGUcgCUUCCGgc-CGAc -3'
miRNA:   3'- -CGCG-----UGCGCGCGuaGAAGGUauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 62029 0.67 0.843339
Target:  5'- uCGC-CGCGCGCgAUCcUCCuccUCGAu -3'
miRNA:   3'- cGCGuGCGCGCG-UAGaAGGuauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 61693 0.76 0.345215
Target:  5'- -gGCGCGCGCGCuUCUgCUcgGUCGAg -3'
miRNA:   3'- cgCGUGCGCGCGuAGAaGGuaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 57761 0.66 0.884107
Target:  5'- cGCGCccgGCGCGCGagaaGUCgaucgugCCGccgAUCGAg -3'
miRNA:   3'- -CGCG---UGCGCGCg---UAGaa-----GGUa--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 56844 0.7 0.670645
Target:  5'- aGCGCucgucgcccgACGCcaGCGCggCggCCAUGUCGAa -3'
miRNA:   3'- -CGCG----------UGCG--CGCGuaGaaGGUAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 55947 0.68 0.777129
Target:  5'- aGCGCACGCgGCGCAUCagC----UCGGg -3'
miRNA:   3'- -CGCGUGCG-CGCGUAGaaGguauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 54921 0.67 0.8254
Target:  5'- -gGCGCGCuGCGUGUCggUCCAauccAUCGGc -3'
miRNA:   3'- cgCGUGCG-CGCGUAGa-AGGUa---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 54887 0.76 0.370929
Target:  5'- aCGC-CGCGCGCAUCUUCUGcg-CGAc -3'
miRNA:   3'- cGCGuGCGCGCGUAGAAGGUauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 53647 0.66 0.884107
Target:  5'- -aGCGCGUGCGCGcCgagcaCCAUcUCGGg -3'
miRNA:   3'- cgCGUGCGCGCGUaGaa---GGUAuAGCU- -5'
24003 3' -52.5 NC_005262.1 + 52042 0.7 0.707834
Target:  5'- aGCGCAgGCGCGCGcgagcggccuccaccUUgUCCGUcgUGAa -3'
miRNA:   3'- -CGCGUgCGCGCGU---------------AGaAGGUAuaGCU- -5'
24003 3' -52.5 NC_005262.1 + 51782 0.67 0.860378
Target:  5'- cGCGCACGaaCGCGC-UCaca-GUGUCGAu -3'
miRNA:   3'- -CGCGUGC--GCGCGuAGaaggUAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 51405 0.66 0.898628
Target:  5'- uUGC-CGCGCGCGgaugCgcCCAUcugGUCGAg -3'
miRNA:   3'- cGCGuGCGCGCGUa---GaaGGUA---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 51323 0.67 0.860378
Target:  5'- gGCGCAucCGCGCGCGgcaagaucgaaUCcgCCAUGcagcUCGGc -3'
miRNA:   3'- -CGCGU--GCGCGCGU-----------AGaaGGUAU----AGCU- -5'
24003 3' -52.5 NC_005262.1 + 50483 0.67 0.834478
Target:  5'- gGCGCugaucgcCGCGCGguUCgcgucgCCAcgGUCGAc -3'
miRNA:   3'- -CGCGu------GCGCGCguAGaa----GGUa-UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 50350 0.67 0.851976
Target:  5'- gGCGCGgGCGCGCccUCgUUgCGgcgGUCGAu -3'
miRNA:   3'- -CGCGUgCGCGCGu-AG-AAgGUa--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 49458 0.68 0.816117
Target:  5'- gGUGaugaACGCGCGCGUCg-CCGaGUCGu -3'
miRNA:   3'- -CGCg---UGCGCGCGUAGaaGGUaUAGCu -5'
24003 3' -52.5 NC_005262.1 + 48192 0.67 0.834478
Target:  5'- uGCGCGCG-GCGCGUCacaUCAUcgcgcGUCGGc -3'
miRNA:   3'- -CGCGUGCgCGCGUAGaa-GGUA-----UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 48117 0.67 0.843339
Target:  5'- cGCGC-CGCGCGCAagagCU-CgGcGUCGAu -3'
miRNA:   3'- -CGCGuGCGCGCGUa---GAaGgUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 45675 0.67 0.856207
Target:  5'- aGCGCAuggugccgcacuuCGUGCGCAUCgagggCCGgcagccggccgugAUCGAg -3'
miRNA:   3'- -CGCGU-------------GCGCGCGUAGaa---GGUa------------UAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.