Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24003 | 3' | -52.5 | NC_005262.1 | + | 44243 | 0.69 | 0.73571 |
Target: 5'- cGCGCuccugcccgaucGCGCGCGCGUCcggCCGgaacgCGGg -3' miRNA: 3'- -CGCG------------UGCGCGCGUAGaa-GGUaua--GCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 43920 | 0.68 | 0.796972 |
Target: 5'- cCGC-CGCGCGCGgccggcccgCggCCGUGUCGc -3' miRNA: 3'- cGCGuGCGCGCGUa--------GaaGGUAUAGCu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 43875 | 0.67 | 0.851976 |
Target: 5'- gGCGCGauCGCGCGCAUgg-CCGacaugaaGUCGAa -3' miRNA: 3'- -CGCGU--GCGCGCGUAgaaGGUa------UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 43528 | 0.68 | 0.816117 |
Target: 5'- cCGCACaaGCGCGUCg-CCGUcgAUCGGa -3' miRNA: 3'- cGCGUGcgCGCGUAGaaGGUA--UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 39914 | 0.67 | 0.860378 |
Target: 5'- cUGCuggauCGCGCGCAUCgcgUCCA--UCa- -3' miRNA: 3'- cGCGu----GCGCGCGUAGa--AGGUauAGcu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 39728 | 0.67 | 0.851976 |
Target: 5'- cGCGCagcagGCGCaGCGCAUCaaccCCAacuggAUCGAc -3' miRNA: 3'- -CGCG-----UGCG-CGCGUAGaa--GGUa----UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 38027 | 0.66 | 0.891501 |
Target: 5'- gGCGUugGCGuCGCGg--UCCAUG-CGc -3' miRNA: 3'- -CGCGugCGC-GCGUagaAGGUAUaGCu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 36465 | 0.66 | 0.876451 |
Target: 5'- gGCGCauggGCGCGCGCGaggCUggcggaCAUcgCGAa -3' miRNA: 3'- -CGCG----UGCGCGCGUa--GAag----GUAuaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 36219 | 0.69 | 0.746252 |
Target: 5'- cGCGCugGCgGUGC-UCgccucgCCGUAUCGc -3' miRNA: 3'- -CGCGugCG-CGCGuAGaa----GGUAUAGCu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 35948 | 0.69 | 0.756678 |
Target: 5'- cGCGCGuCGCGCGCAcaaacaUCUgggCgGUcgCGGc -3' miRNA: 3'- -CGCGU-GCGCGCGU------AGAa--GgUAuaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 35871 | 0.69 | 0.732526 |
Target: 5'- uGCGCggcgACGCGCGCAccuaucggcUCaUCCAcggggccggcacagUGUCGAu -3' miRNA: 3'- -CGCG----UGCGCGCGU---------AGaAGGU--------------AUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 35462 | 0.66 | 0.898628 |
Target: 5'- aGCGcCGCGUGCGCcagcauaUUUCCGccgGUCGGu -3' miRNA: 3'- -CGC-GUGCGCGCGua-----GAAGGUa--UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 34161 | 0.66 | 0.884107 |
Target: 5'- cGCGCGCGCG-GCGUgCcagUCCGgguucuggucGUCGAg -3' miRNA: 3'- -CGCGUGCGCgCGUA-Ga--AGGUa---------UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 34132 | 0.81 | 0.19083 |
Target: 5'- cGCGCAC-CGCGCAUCUUCUAcGUCu- -3' miRNA: 3'- -CGCGUGcGCGCGUAGAAGGUaUAGcu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 33950 | 0.7 | 0.692601 |
Target: 5'- uCGCGCGCGCGUcgUUgaUCCAc-UCGAu -3' miRNA: 3'- cGCGUGCGCGCGuaGA--AGGUauAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 33880 | 0.68 | 0.805679 |
Target: 5'- cGCGCGCGagacgauCGUGCGUCggCCGgcggcccgAUCGGu -3' miRNA: 3'- -CGCGUGC-------GCGCGUAGaaGGUa-------UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 33328 | 0.68 | 0.777129 |
Target: 5'- aGCGCucgACGUGCGCGUCgaugUUgAcGUCGGc -3' miRNA: 3'- -CGCG---UGCGCGCGUAGa---AGgUaUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 33296 | 0.67 | 0.8254 |
Target: 5'- cGCGCACGCcggGCGCcgaagCCGUcgaGUCGGa -3' miRNA: 3'- -CGCGUGCG---CGCGuagaaGGUA---UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 33249 | 0.73 | 0.517308 |
Target: 5'- cGCGCACGuCGaGCG-CUUCC-UGUCGAu -3' miRNA: 3'- -CGCGUGC-GCgCGUaGAAGGuAUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 31852 | 0.66 | 0.868539 |
Target: 5'- gGUGCACGCG-GCAUCaaCCucgacuucAUCGAa -3' miRNA: 3'- -CGCGUGCGCgCGUAGaaGGua------UAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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