miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 43875 0.67 0.851976
Target:  5'- gGCGCGauCGCGCGCAUgg-CCGacaugaaGUCGAa -3'
miRNA:   3'- -CGCGU--GCGCGCGUAgaaGGUa------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33880 0.68 0.805679
Target:  5'- cGCGCGCGagacgauCGUGCGUCggCCGgcggcccgAUCGGu -3'
miRNA:   3'- -CGCGUGC-------GCGCGUAGaaGGUa-------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 28168 0.68 0.806637
Target:  5'- gGCGCAacUGCGCGCggCggCC--GUCGAc -3'
miRNA:   3'- -CGCGU--GCGCGCGuaGaaGGuaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 30832 0.68 0.806637
Target:  5'- cGCGUcucgGCGaCGCGCAUCgUCgAcGUCGGg -3'
miRNA:   3'- -CGCG----UGC-GCGCGUAGaAGgUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 23572 0.67 0.8254
Target:  5'- cGCGCGCGgGCGCAggagaucgCCGUGaaaacCGAg -3'
miRNA:   3'- -CGCGUGCgCGCGUagaa----GGUAUa----GCU- -5'
24003 3' -52.5 NC_005262.1 + 33296 0.67 0.8254
Target:  5'- cGCGCACGCcggGCGCcgaagCCGUcgaGUCGGa -3'
miRNA:   3'- -CGCGUGCG---CGCGuagaaGGUA---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 62029 0.67 0.843339
Target:  5'- uCGC-CGCGCGCgAUCcUCCuccUCGAu -3'
miRNA:   3'- cGCGuGCGCGCG-UAGaAGGuauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 24731 0.67 0.843339
Target:  5'- cGCGCugGCGCGCGcgaUCgg-CGUG-CGGc -3'
miRNA:   3'- -CGCGugCGCGCGU---AGaagGUAUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 48117 0.67 0.843339
Target:  5'- cGCGC-CGCGCGCAagagCU-CgGcGUCGAu -3'
miRNA:   3'- -CGCGuGCGCGCGUa---GAaGgUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 13385 0.68 0.787133
Target:  5'- uGCGCcuggGCGCGCGCAUCcacgagcUCCg---CGAg -3'
miRNA:   3'- -CGCG----UGCGCGCGUAGa------AGGuauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 17490 0.68 0.787133
Target:  5'- aGCGCGCGcCGCGCG-Cga-CGcGUCGAu -3'
miRNA:   3'- -CGCGUGC-GCGCGUaGaagGUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 15590 0.68 0.787133
Target:  5'- gGCGCGCGCGCGCGaggagCgCGUG-CGGc -3'
miRNA:   3'- -CGCGUGCGCGCGUagaa-G-GUAUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 34132 0.81 0.19083
Target:  5'- cGCGCAC-CGCGCAUCUUCUAcGUCu- -3'
miRNA:   3'- -CGCGUGcGCGCGUAGAAGGUaUAGcu -5'
24003 3' -52.5 NC_005262.1 + 4555 0.78 0.283046
Target:  5'- uGCGCGCGCgGCGCAUCUcgcgCCAg--CGGc -3'
miRNA:   3'- -CGCGUGCG-CGCGUAGAa---GGUauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 10340 0.74 0.445597
Target:  5'- uGCGCAaGgGCGCAUCUgUCUAcAUCGAg -3'
miRNA:   3'- -CGCGUgCgCGCGUAGA-AGGUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 62945 0.74 0.445597
Target:  5'- aGCGCgauuuGCGCGCGUcgCUUCCGgc-CGAc -3'
miRNA:   3'- -CGCG-----UGCGCGCGuaGAAGGUauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 33249 0.73 0.517308
Target:  5'- cGCGCACGuCGaGCG-CUUCC-UGUCGAu -3'
miRNA:   3'- -CGCGUGC-GCgCGUaGAAGGuAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 3174 0.72 0.538661
Target:  5'- uGCGCAggucgccaauCGCGCGCAUCU----UGUCGAa -3'
miRNA:   3'- -CGCGU----------GCGCGCGUAGAagguAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 35871 0.69 0.732526
Target:  5'- uGCGCggcgACGCGCGCAccuaucggcUCaUCCAcggggccggcacagUGUCGAu -3'
miRNA:   3'- -CGCG----UGCGCGCGU---------AGaAGGU--------------AUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 23687 0.68 0.787133
Target:  5'- aGCgGCGCGUGUGgGUCUaCCGgcgcacgGUCGAc -3'
miRNA:   3'- -CG-CGUGCGCGCgUAGAaGGUa------UAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.