miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 62945 0.74 0.445597
Target:  5'- aGCGCgauuuGCGCGCGUcgCUUCCGgc-CGAc -3'
miRNA:   3'- -CGCG-----UGCGCGCGuaGAAGGUauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 33249 0.73 0.517308
Target:  5'- cGCGCACGuCGaGCG-CUUCC-UGUCGAu -3'
miRNA:   3'- -CGCGUGC-GCgCGUaGAAGGuAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 3174 0.72 0.538661
Target:  5'- uGCGCAggucgccaauCGCGCGCAUCU----UGUCGAa -3'
miRNA:   3'- -CGCGU----------GCGCGCGUAGAagguAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 35871 0.69 0.732526
Target:  5'- uGCGCggcgACGCGCGCAccuaucggcUCaUCCAcggggccggcacagUGUCGAu -3'
miRNA:   3'- -CGCG----UGCGCGCGU---------AGaAGGU--------------AUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 28168 0.68 0.806637
Target:  5'- gGCGCAacUGCGCGCggCggCC--GUCGAc -3'
miRNA:   3'- -CGCGU--GCGCGCGuaGaaGGuaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33880 0.68 0.805679
Target:  5'- cGCGCGCGagacgauCGUGCGUCggCCGgcggcccgAUCGGu -3'
miRNA:   3'- -CGCGUGC-------GCGCGUAGaaGGUa-------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 13385 0.68 0.787133
Target:  5'- uGCGCcuggGCGCGCGCAUCcacgagcUCCg---CGAg -3'
miRNA:   3'- -CGCG----UGCGCGCGUAGa------AGGuauaGCU- -5'
24003 3' -52.5 NC_005262.1 + 17490 0.68 0.787133
Target:  5'- aGCGCGCGcCGCGCG-Cga-CGcGUCGAu -3'
miRNA:   3'- -CGCGUGC-GCGCGUaGaagGUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 15590 0.68 0.787133
Target:  5'- gGCGCGCGCGCGCGaggagCgCGUG-CGGc -3'
miRNA:   3'- -CGCGUGCGCGCGUagaa-G-GUAUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 23687 0.68 0.787133
Target:  5'- aGCgGCGCGUGUGgGUCUaCCGgcgcacgGUCGAc -3'
miRNA:   3'- -CG-CGUGCGCGCgUAGAaGGUa------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 57761 0.66 0.884107
Target:  5'- cGCGCccgGCGCGCGagaaGUCgaucgugCCGccgAUCGAg -3'
miRNA:   3'- -CGCG---UGCGCGCg---UAGaa-----GGUa--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 34161 0.66 0.884107
Target:  5'- cGCGCGCGCG-GCGUgCcagUCCGgguucuggucGUCGAg -3'
miRNA:   3'- -CGCGUGCGCgCGUA-Ga--AGGUa---------UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 23441 0.66 0.884107
Target:  5'- cCGC-CGCGCGCuUCacgCCGgccgugGUCGAg -3'
miRNA:   3'- cGCGuGCGCGCGuAGaa-GGUa-----UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 15787 0.66 0.884107
Target:  5'- aGCGCAUaGCGCuGC-UCgUCCGUcUCGGc -3'
miRNA:   3'- -CGCGUG-CGCG-CGuAGaAGGUAuAGCU- -5'
24003 3' -52.5 NC_005262.1 + 38027 0.66 0.891501
Target:  5'- gGCGUugGCGuCGCGg--UCCAUG-CGc -3'
miRNA:   3'- -CGCGugCGC-GCGUagaAGGUAUaGCu -5'
24003 3' -52.5 NC_005262.1 + 17220 0.66 0.891501
Target:  5'- uGCG-ACGCGCGCGUUcuuguggUCCAUcgCc- -3'
miRNA:   3'- -CGCgUGCGCGCGUAGa------AGGUAuaGcu -5'
24003 3' -52.5 NC_005262.1 + 13006 0.66 0.891501
Target:  5'- aGCGCGC-CGCGCAgguugUCGUGUCc- -3'
miRNA:   3'- -CGCGUGcGCGCGUagaa-GGUAUAGcu -5'
24003 3' -52.5 NC_005262.1 + 35462 0.66 0.898628
Target:  5'- aGCGcCGCGUGCGCcagcauaUUUCCGccgGUCGGu -3'
miRNA:   3'- -CGC-GUGCGCGCGua-----GAAGGUa--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 51405 0.66 0.898628
Target:  5'- uUGC-CGCGCGCGgaugCgcCCAUcugGUCGAg -3'
miRNA:   3'- cGCGuGCGCGCGUa---GaaGGUA---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 63403 0.8 0.212482
Target:  5'- gGCGaCGCgGCGCGCGUgUUCCAcGUCGAc -3'
miRNA:   3'- -CGC-GUG-CGCGCGUAgAAGGUaUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.