Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24003 | 3' | -52.5 | NC_005262.1 | + | 17567 | 0.69 | 0.746252 |
Target: 5'- cGCGCgGCGCGCGCuUCgUCCuggaacUCGGc -3' miRNA: 3'- -CGCG-UGCGCGCGuAGaAGGuau---AGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 28422 | 0.69 | 0.746252 |
Target: 5'- cGCuGCACGCGCacggGCAUCcggaaCCAUGccUCGAu -3' miRNA: 3'- -CG-CGUGCGCG----CGUAGaa---GGUAU--AGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 36219 | 0.69 | 0.746252 |
Target: 5'- cGCGCugGCgGUGC-UCgccucgCCGUAUCGc -3' miRNA: 3'- -CGCGugCG-CGCGuAGaa----GGUAUAGCu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 21833 | 0.69 | 0.73571 |
Target: 5'- cGUGC-CGCuGCGCgAUCUUCCGUGagcgccUUGAg -3' miRNA: 3'- -CGCGuGCG-CGCG-UAGAAGGUAU------AGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 48192 | 0.67 | 0.834478 |
Target: 5'- uGCGCGCG-GCGCGUCacaUCAUcgcgcGUCGGc -3' miRNA: 3'- -CGCGUGCgCGCGUAGaa-GGUA-----UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 12022 | 0.67 | 0.843339 |
Target: 5'- -aGCGCGUGCGCcAUgUUCCcgA-CGAu -3' miRNA: 3'- cgCGUGCGCGCG-UAgAAGGuaUaGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 50350 | 0.67 | 0.851976 |
Target: 5'- gGCGCGgGCGCGCccUCgUUgCGgcgGUCGAu -3' miRNA: 3'- -CGCGUgCGCGCGu-AG-AAgGUa--UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 51405 | 0.66 | 0.898628 |
Target: 5'- uUGC-CGCGCGCGgaugCgcCCAUcugGUCGAg -3' miRNA: 3'- cGCGuGCGCGCGUa---GaaGGUA---UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 35462 | 0.66 | 0.898628 |
Target: 5'- aGCGcCGCGUGCGCcagcauaUUUCCGccgGUCGGu -3' miRNA: 3'- -CGC-GUGCGCGCGua-----GAAGGUa--UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 13006 | 0.66 | 0.891501 |
Target: 5'- aGCGCGC-CGCGCAgguugUCGUGUCc- -3' miRNA: 3'- -CGCGUGcGCGCGUagaa-GGUAUAGcu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 17220 | 0.66 | 0.891501 |
Target: 5'- uGCG-ACGCGCGCGUUcuuguggUCCAUcgCc- -3' miRNA: 3'- -CGCgUGCGCGCGUAGa------AGGUAuaGcu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 38027 | 0.66 | 0.891501 |
Target: 5'- gGCGUugGCGuCGCGg--UCCAUG-CGc -3' miRNA: 3'- -CGCGugCGC-GCGUagaAGGUAUaGCu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 15787 | 0.66 | 0.884107 |
Target: 5'- aGCGCAUaGCGCuGC-UCgUCCGUcUCGGc -3' miRNA: 3'- -CGCGUG-CGCG-CGuAGaAGGUAuAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 23441 | 0.66 | 0.884107 |
Target: 5'- cCGC-CGCGCGCuUCacgCCGgccgugGUCGAg -3' miRNA: 3'- cGCGuGCGCGCGuAGaa-GGUa-----UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 34161 | 0.66 | 0.884107 |
Target: 5'- cGCGCGCGCG-GCGUgCcagUCCGgguucuggucGUCGAg -3' miRNA: 3'- -CGCGUGCGCgCGUA-Ga--AGGUa---------UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 57761 | 0.66 | 0.884107 |
Target: 5'- cGCGCccgGCGCGCGagaaGUCgaucgugCCGccgAUCGAg -3' miRNA: 3'- -CGCG---UGCGCGCg---UAGaa-----GGUa--UAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 53647 | 0.66 | 0.884107 |
Target: 5'- -aGCGCGUGCGCGcCgagcaCCAUcUCGGg -3' miRNA: 3'- cgCGUGCGCGCGUaGaa---GGUAuAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 39914 | 0.67 | 0.860378 |
Target: 5'- cUGCuggauCGCGCGCAUCgcgUCCA--UCa- -3' miRNA: 3'- cGCGu----GCGCGCGUAGa--AGGUauAGcu -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 51782 | 0.67 | 0.860378 |
Target: 5'- cGCGCACGaaCGCGC-UCaca-GUGUCGAu -3' miRNA: 3'- -CGCGUGC--GCGCGuAGaaggUAUAGCU- -5' |
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24003 | 3' | -52.5 | NC_005262.1 | + | 5875 | 0.67 | 0.852826 |
Target: 5'- cGUGCAUGCGCGCGgcgcaagauggccugUUUCCGgauggccgCGAg -3' miRNA: 3'- -CGCGUGCGCGCGUa--------------GAAGGUaua-----GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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