miRNA display CGI


Results 21 - 40 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24003 3' -52.5 NC_005262.1 + 55947 0.68 0.777129
Target:  5'- aGCGCACGCgGCGCAUCagC----UCGGg -3'
miRNA:   3'- -CGCGUGCG-CGCGUAGaaGguauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33328 0.68 0.777129
Target:  5'- aGCGCucgACGUGCGCGUCgaugUUgAcGUCGGc -3'
miRNA:   3'- -CGCG---UGCGCGCGUAGa---AGgUaUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 50483 0.67 0.834478
Target:  5'- gGCGCugaucgcCGCGCGguUCgcgucgCCAcgGUCGAc -3'
miRNA:   3'- -CGCGu------GCGCGCguAGaa----GGUa-UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 50350 0.67 0.851976
Target:  5'- gGCGCGgGCGCGCccUCgUUgCGgcgGUCGAu -3'
miRNA:   3'- -CGCGUgCGCGCGu-AG-AAgGUa--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 33950 0.7 0.692601
Target:  5'- uCGCGCGCGCGUcgUUgaUCCAc-UCGAu -3'
miRNA:   3'- cGCGUGCGCGCGuaGA--AGGUauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 28422 0.69 0.746252
Target:  5'- cGCuGCACGCGCacggGCAUCcggaaCCAUGccUCGAu -3'
miRNA:   3'- -CG-CGUGCGCG----CGUAGaa---GGUAU--AGCU- -5'
24003 3' -52.5 NC_005262.1 + 49458 0.68 0.816117
Target:  5'- gGUGaugaACGCGCGCGUCg-CCGaGUCGu -3'
miRNA:   3'- -CGCg---UGCGCGCGUAGaaGGUaUAGCu -5'
24003 3' -52.5 NC_005262.1 + 5875 0.67 0.852826
Target:  5'- cGUGCAUGCGCGCGgcgcaagauggccugUUUCCGgauggccgCGAg -3'
miRNA:   3'- -CGCGUGCGCGCGUa--------------GAAGGUaua-----GCU- -5'
24003 3' -52.5 NC_005262.1 + 17567 0.69 0.746252
Target:  5'- cGCGCgGCGCGCGCuUCgUCCuggaacUCGGc -3'
miRNA:   3'- -CGCG-UGCGCGCGuAGaAGGuau---AGCU- -5'
24003 3' -52.5 NC_005262.1 + 51782 0.67 0.860378
Target:  5'- cGCGCACGaaCGCGC-UCaca-GUGUCGAu -3'
miRNA:   3'- -CGCGUGC--GCGCGuAGaaggUAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 43920 0.68 0.796972
Target:  5'- cCGC-CGCGCGCGgccggcccgCggCCGUGUCGc -3'
miRNA:   3'- cGCGuGCGCGCGUa--------GaaGGUAUAGCu -5'
24003 3' -52.5 NC_005262.1 + 13556 0.69 0.756678
Target:  5'- cGCGCgACGCGCGCGggCUUCgCGcccuugCGAc -3'
miRNA:   3'- -CGCG-UGCGCGCGUa-GAAG-GUaua---GCU- -5'
24003 3' -52.5 NC_005262.1 + 43528 0.68 0.816117
Target:  5'- cCGCACaaGCGCGUCg-CCGUcgAUCGGa -3'
miRNA:   3'- cGCGUGcgCGCGUAGaaGGUA--UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 54921 0.67 0.8254
Target:  5'- -gGCGCGCuGCGUGUCggUCCAauccAUCGGc -3'
miRNA:   3'- cgCGUGCG-CGCGUAGa-AGGUa---UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 48192 0.67 0.834478
Target:  5'- uGCGCGCG-GCGCGUCacaUCAUcgcgcGUCGGc -3'
miRNA:   3'- -CGCGUGCgCGCGUAGaa-GGUA-----UAGCU- -5'
24003 3' -52.5 NC_005262.1 + 12022 0.67 0.843339
Target:  5'- -aGCGCGUGCGCcAUgUUCCcgA-CGAu -3'
miRNA:   3'- cgCGUGCGCGCG-UAgAAGGuaUaGCU- -5'
24003 3' -52.5 NC_005262.1 + 25020 0.72 0.582185
Target:  5'- cGCGCggccAUGUGCGCAUCccgCCAUGccUCGGc -3'
miRNA:   3'- -CGCG----UGCGCGCGUAGaa-GGUAU--AGCU- -5'
24003 3' -52.5 NC_005262.1 + 56844 0.7 0.670645
Target:  5'- aGCGCucgucgcccgACGCcaGCGCggCggCCAUGUCGAa -3'
miRNA:   3'- -CGCG----------UGCG--CGCGuaGaaGGUAUAGCU- -5'
24003 3' -52.5 NC_005262.1 + 26648 0.69 0.725062
Target:  5'- uGCGCgaacugGCGCaGCGCGUCggCCGcuUCGGa -3'
miRNA:   3'- -CGCG------UGCG-CGCGUAGaaGGUauAGCU- -5'
24003 3' -52.5 NC_005262.1 + 36219 0.69 0.746252
Target:  5'- cGCGCugGCgGUGC-UCgccucgCCGUAUCGc -3'
miRNA:   3'- -CGCGugCG-CGCGuAGaa----GGUAUAGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.