miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 51337 0.66 0.688143
Target:  5'- cUUGCCGuCCUUACCguagccgGCGCGCAUGa- -3'
miRNA:   3'- -AGUGGUuGGGGUGGa------UGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 28438 0.66 0.688143
Target:  5'- gUugCGGCCCUugagGCgCUgcACGCGCACGg- -3'
miRNA:   3'- aGugGUUGGGG----UG-GA--UGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 8153 0.66 0.688143
Target:  5'- -uGCCugauugcuCCCCACgCUcacccagaacGCGCGCuGCGUCa -3'
miRNA:   3'- agUGGuu------GGGGUG-GA----------UGCGCG-UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 52121 0.66 0.684944
Target:  5'- aCGCCGugaaGCCCUACCUGCugucguucugggagGCgGCGCG-Ca -3'
miRNA:   3'- aGUGGU----UGGGGUGGAUG--------------CG-CGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 21435 0.66 0.684944
Target:  5'- gCGCgCGGCCuuggCCGCCUcgaucgccuccuggACGUGCGCGUa -3'
miRNA:   3'- aGUG-GUUGG----GGUGGA--------------UGCGCGUGCAg -5'
24004 3' -56.9 NC_005262.1 + 11328 0.66 0.677462
Target:  5'- -aAUCGGCCCUccuccgcaagacGCCgcucgcGCGCGgCACGUCg -3'
miRNA:   3'- agUGGUUGGGG------------UGGa-----UGCGC-GUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 53339 0.66 0.677462
Target:  5'- gCGCCGcuACCUCGCCgAC-CGCGCGa- -3'
miRNA:   3'- aGUGGU--UGGGGUGGaUGcGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 54092 0.66 0.677462
Target:  5'- uUCAagaaCGACCCgCugCUGCGCcucgACGUCg -3'
miRNA:   3'- -AGUg---GUUGGG-GugGAUGCGcg--UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 10577 0.66 0.677462
Target:  5'- cCGCCAugCUgGCgCUGC-UGCugGUCg -3'
miRNA:   3'- aGUGGUugGGgUG-GAUGcGCGugCAG- -5'
24004 3' -56.9 NC_005262.1 + 58987 0.66 0.677462
Target:  5'- cCGCCGGCCUgAUC-GCGCaGCGCGg- -3'
miRNA:   3'- aGUGGUUGGGgUGGaUGCG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 28443 0.66 0.675321
Target:  5'- gCGCCGugCUCGCCgugucgccgaugAUGCGCAUG-Ca -3'
miRNA:   3'- aGUGGUugGGGUGGa-----------UGCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 55121 0.66 0.666741
Target:  5'- aUCAUCGugaacgucuuGCCCgCGCCgaccGCGUGCGCGa- -3'
miRNA:   3'- -AGUGGU----------UGGG-GUGGa---UGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 47097 0.66 0.666741
Target:  5'- gCGCCcucgauguCgCCCAUCUGCGuCGCGCGcCa -3'
miRNA:   3'- aGUGGuu------G-GGGUGGAUGC-GCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 56527 0.66 0.666741
Target:  5'- cCGCCGAUCagcaCGCgCUuuuugcccuCGCGCAUGUCg -3'
miRNA:   3'- aGUGGUUGGg---GUG-GAu--------GCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 35303 0.66 0.666741
Target:  5'- cCGCCGACCuCCGCauccuUGCGgACGUa -3'
miRNA:   3'- aGUGGUUGG-GGUGgau--GCGCgUGCAg -5'
24004 3' -56.9 NC_005262.1 + 2644 0.66 0.666741
Target:  5'- -gAUCGGCCCaUGCCUGCGCgGCgccgggcgGCGUCc -3'
miRNA:   3'- agUGGUUGGG-GUGGAUGCG-CG--------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 39628 0.66 0.666741
Target:  5'- cUACCGACgCCCu----CGCGCGCGUg -3'
miRNA:   3'- aGUGGUUG-GGGuggauGCGCGUGCAg -5'
24004 3' -56.9 NC_005262.1 + 38691 0.66 0.655988
Target:  5'- --gUCAGCCCCuuagcaguuGCgaACGCGCACGcCa -3'
miRNA:   3'- aguGGUUGGGG---------UGgaUGCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 49360 0.66 0.645214
Target:  5'- cUCGCUgacGACUCgGCg-ACGCGCGCGUUc -3'
miRNA:   3'- -AGUGG---UUGGGgUGgaUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 50659 0.66 0.645214
Target:  5'- -aACCGGCUCCaguaaaggacGCCUACGCGgGCa-- -3'
miRNA:   3'- agUGGUUGGGG----------UGGAUGCGCgUGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.