Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24004 | 3' | -56.9 | NC_005262.1 | + | 21435 | 0.66 | 0.684944 |
Target: 5'- gCGCgCGGCCuuggCCGCCUcgaucgccuccuggACGUGCGCGUa -3' miRNA: 3'- aGUG-GUUGG----GGUGGA--------------UGCGCGUGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 2644 | 0.66 | 0.666741 |
Target: 5'- -gAUCGGCCCaUGCCUGCGCgGCgccgggcgGCGUCc -3' miRNA: 3'- agUGGUUGGG-GUGGAUGCG-CG--------UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 10577 | 0.66 | 0.677462 |
Target: 5'- cCGCCAugCUgGCgCUGC-UGCugGUCg -3' miRNA: 3'- aGUGGUugGGgUG-GAUGcGCGugCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 53339 | 0.66 | 0.677462 |
Target: 5'- gCGCCGcuACCUCGCCgAC-CGCGCGa- -3' miRNA: 3'- aGUGGU--UGGGGUGGaUGcGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 24724 | 0.66 | 0.634428 |
Target: 5'- -aGCUGAUCgCGCUgGCGCGCGCGaUCg -3' miRNA: 3'- agUGGUUGGgGUGGaUGCGCGUGC-AG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 50659 | 0.66 | 0.645214 |
Target: 5'- -aACCGGCUCCaguaaaggacGCCUACGCGgGCa-- -3' miRNA: 3'- agUGGUUGGGG----------UGGAUGCGCgUGcag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 58978 | 0.66 | 0.634428 |
Target: 5'- cCGCCGgcgGCCUCacGCCUccCGCGC-CGUCg -3' miRNA: 3'- aGUGGU---UGGGG--UGGAu-GCGCGuGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 51337 | 0.66 | 0.688143 |
Target: 5'- cUUGCCGuCCUUACCguagccgGCGCGCAUGa- -3' miRNA: 3'- -AGUGGUuGGGGUGGa------UGCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 58987 | 0.66 | 0.677462 |
Target: 5'- cCGCCGGCCUgAUC-GCGCaGCGCGg- -3' miRNA: 3'- aGUGGUUGGGgUGGaUGCG-CGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 39628 | 0.66 | 0.666741 |
Target: 5'- cUACCGACgCCCu----CGCGCGCGUg -3' miRNA: 3'- aGUGGUUG-GGGuggauGCGCGUGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 29863 | 0.66 | 0.645214 |
Target: 5'- -gGCCGGCCUgACCgacgaggaGCGCGCGg- -3' miRNA: 3'- agUGGUUGGGgUGGaug-----CGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 52121 | 0.66 | 0.684944 |
Target: 5'- aCGCCGugaaGCCCUACCUGCugucguucugggagGCgGCGCG-Ca -3' miRNA: 3'- aGUGGU----UGGGGUGGAUG--------------CG-CGUGCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 54092 | 0.66 | 0.677462 |
Target: 5'- uUCAagaaCGACCCgCugCUGCGCcucgACGUCg -3' miRNA: 3'- -AGUg---GUUGGG-GugGAUGCGcg--UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 28443 | 0.66 | 0.675321 |
Target: 5'- gCGCCGugCUCGCCgugucgccgaugAUGCGCAUG-Ca -3' miRNA: 3'- aGUGGUugGGGUGGa-----------UGCGCGUGCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 28438 | 0.66 | 0.688143 |
Target: 5'- gUugCGGCCCUugagGCgCUgcACGCGCACGg- -3' miRNA: 3'- aGugGUUGGGG----UG-GA--UGCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 8153 | 0.66 | 0.688143 |
Target: 5'- -uGCCugauugcuCCCCACgCUcacccagaacGCGCGCuGCGUCa -3' miRNA: 3'- agUGGuu------GGGGUG-GA----------UGCGCG-UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 49360 | 0.66 | 0.645214 |
Target: 5'- cUCGCUgacGACUCgGCg-ACGCGCGCGUUc -3' miRNA: 3'- -AGUGG---UUGGGgUGgaUGCGCGUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 63597 | 0.66 | 0.634428 |
Target: 5'- cCGCCGcCCCCGCCgGCGUggaccaugaaGC-CGUCc -3' miRNA: 3'- aGUGGUuGGGGUGGaUGCG----------CGuGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 56527 | 0.66 | 0.666741 |
Target: 5'- cCGCCGAUCagcaCGCgCUuuuugcccuCGCGCAUGUCg -3' miRNA: 3'- aGUGGUUGGg---GUG-GAu--------GCGCGUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 11328 | 0.66 | 0.677462 |
Target: 5'- -aAUCGGCCCUccuccgcaagacGCCgcucgcGCGCGgCACGUCg -3' miRNA: 3'- agUGGUUGGGG------------UGGa-----UGCGC-GUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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