miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 5216 0.66 0.645214
Target:  5'- -gAUCAGCgCCGCCcguCGCGCAUGg- -3'
miRNA:   3'- agUGGUUGgGGUGGau-GCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 38691 0.66 0.655988
Target:  5'- --gUCAGCCCCuuagcaguuGCgaACGCGCACGcCa -3'
miRNA:   3'- aguGGUUGGGG---------UGgaUGCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 55121 0.66 0.666741
Target:  5'- aUCAUCGugaacgucuuGCCCgCGCCgaccGCGUGCGCGa- -3'
miRNA:   3'- -AGUGGU----------UGGG-GUGGa---UGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 47097 0.66 0.666741
Target:  5'- gCGCCcucgauguCgCCCAUCUGCGuCGCGCGcCa -3'
miRNA:   3'- aGUGGuu------G-GGGUGGAUGC-GCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 49360 0.66 0.645214
Target:  5'- cUCGCUgacGACUCgGCg-ACGCGCGCGUUc -3'
miRNA:   3'- -AGUGG---UUGGGgUGgaUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 2644 0.66 0.666741
Target:  5'- -gAUCGGCCCaUGCCUGCGCgGCgccgggcgGCGUCc -3'
miRNA:   3'- agUGGUUGGG-GUGGAUGCG-CG--------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 39628 0.66 0.666741
Target:  5'- cUACCGACgCCCu----CGCGCGCGUg -3'
miRNA:   3'- aGUGGUUG-GGGuggauGCGCGUGCAg -5'
24004 3' -56.9 NC_005262.1 + 13197 0.67 0.579582
Target:  5'- -gGCUAACCCUgguCCgUGCGCGCaaccggcGCGUCc -3'
miRNA:   3'- agUGGUUGGGGu--GG-AUGCGCG-------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 9709 0.67 0.580651
Target:  5'- gCGCCaAACCCgagggCGCCaUACGCGU-CGUCa -3'
miRNA:   3'- aGUGG-UUGGG-----GUGG-AUGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 23558 0.67 0.580651
Target:  5'- -gACCAACCgC-CCgcCGCGCGCGg- -3'
miRNA:   3'- agUGGUUGGgGuGGauGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 3 0.67 0.591357
Target:  5'- cUACUguuCCCCuCCUGCGCGggcgGCGUCg -3'
miRNA:   3'- aGUGGuu-GGGGuGGAUGCGCg---UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 24550 0.67 0.612861
Target:  5'- aUCGCCGGCgugaUCCugCUGauCGCGUcCGUCg -3'
miRNA:   3'- -AGUGGUUG----GGGugGAU--GCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 17118 0.67 0.591357
Target:  5'- cCACCGcgcgGCgauggaCCACaagaACGCGCGCGUCg -3'
miRNA:   3'- aGUGGU----UGg-----GGUGga--UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 53166 0.67 0.591357
Target:  5'- aUCGgCAACCCgC-CCUuCGCGUcCGUCg -3'
miRNA:   3'- -AGUgGUUGGG-GuGGAuGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 53667 0.67 0.595649
Target:  5'- aUCGCCAACCugCCcgagggcaucuaucaGCCggGCGCGCagaacccggccGCGUCg -3'
miRNA:   3'- -AGUGGUUGG--GG---------------UGGa-UGCGCG-----------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 13368 0.67 0.601021
Target:  5'- gCGCCAGCacggaauCCUgcGCCUGgGCGCGCG-Ca -3'
miRNA:   3'- aGUGGUUG-------GGG--UGGAUgCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 16275 0.67 0.602097
Target:  5'- aCACaAugCCUugCUGCGCGC-CGcUCg -3'
miRNA:   3'- aGUGgUugGGGugGAUGCGCGuGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 39771 0.67 0.602097
Target:  5'- cCGCCAGCCgaCCAUCccgACGCGUAUcUCg -3'
miRNA:   3'- aGUGGUUGG--GGUGGa--UGCGCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 11179 0.67 0.612861
Target:  5'- aCGCCGACgacgCCGCCgugauCGUGCGCGcCa -3'
miRNA:   3'- aGUGGUUGg---GGUGGau---GCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 22247 0.67 0.591357
Target:  5'- aCGCCGG-CCgGCCUGCGCaucacGC-CGUCg -3'
miRNA:   3'- aGUGGUUgGGgUGGAUGCG-----CGuGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.