miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 21785 0.67 0.591357
Target:  5'- aUCugCGugCCCGCgUACaGCaGCGCGg- -3'
miRNA:   3'- -AGugGUugGGGUGgAUG-CG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 49326 0.67 0.601021
Target:  5'- gUCGCgGACCUCGCgcgcggaCUGCGCGC-CGcCg -3'
miRNA:   3'- -AGUGgUUGGGGUG-------GAUGCGCGuGCaG- -5'
24004 3' -56.9 NC_005262.1 + 24974 0.67 0.602097
Target:  5'- -gGCCGAgCUCGCCUucACGCGCcgGCGg- -3'
miRNA:   3'- agUGGUUgGGGUGGA--UGCGCG--UGCag -5'
24004 3' -56.9 NC_005262.1 + 17238 0.67 0.602097
Target:  5'- cUUGCCGGCCUucucgaUugCgACGCGCGCGUUc -3'
miRNA:   3'- -AGUGGUUGGG------GugGaUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 36396 0.67 0.612861
Target:  5'- gCACCGGCCCCccaccgaagucgACCgAgGUGUucGCGUCg -3'
miRNA:   3'- aGUGGUUGGGG------------UGGaUgCGCG--UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 11128 0.67 0.623641
Target:  5'- gCugCGGCCUgUugCUGCGCGCG-GUCu -3'
miRNA:   3'- aGugGUUGGG-GugGAUGCGCGUgCAG- -5'
24004 3' -56.9 NC_005262.1 + 10664 0.67 0.623641
Target:  5'- gCGCCGcgcuGCUCCGCgguacgcugcggCUGCGCGCggccggucGCGUCg -3'
miRNA:   3'- aGUGGU----UGGGGUG------------GAUGCGCG--------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 57205 0.67 0.623641
Target:  5'- cUCGCCGgaGCCCUugAgCUGCGUGC-CGUg -3'
miRNA:   3'- -AGUGGU--UGGGG--UgGAUGCGCGuGCAg -5'
24004 3' -56.9 NC_005262.1 + 37798 0.67 0.580651
Target:  5'- uUCAC--GCCCCAUCUGCaCGC-CGUUa -3'
miRNA:   3'- -AGUGguUGGGGUGGAUGcGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 4689 0.67 0.580651
Target:  5'- gUCACC-GCCCguuCCUGCGgGCGC-UCa -3'
miRNA:   3'- -AGUGGuUGGGgu-GGAUGCgCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 2566 0.67 0.623641
Target:  5'- gUCGCCAAgCgcggCACC-ACGCGCAUGcUCa -3'
miRNA:   3'- -AGUGGUUgGg---GUGGaUGCGCGUGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 17118 0.67 0.591357
Target:  5'- cCACCGcgcgGCgauggaCCACaagaACGCGCGCGUCg -3'
miRNA:   3'- aGUGGU----UGg-----GGUGga--UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 40633 0.68 0.569985
Target:  5'- gUCAaCGACCCCgGCC-ACGgGCACGg- -3'
miRNA:   3'- -AGUgGUUGGGG-UGGaUGCgCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 31904 0.68 0.569985
Target:  5'- aCGCgGGCaaCCCGCUcgACGCGCcggACGUCg -3'
miRNA:   3'- aGUGgUUG--GGGUGGa-UGCGCG---UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 50088 0.68 0.559368
Target:  5'- gCGCCGACCgaACCcGCGCcGCGCGa- -3'
miRNA:   3'- aGUGGUUGGggUGGaUGCG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 28282 0.68 0.569985
Target:  5'- -gGCCGGCgCUgucGCCUAUGCGCGCa-- -3'
miRNA:   3'- agUGGUUGgGG---UGGAUGCGCGUGcag -5'
24004 3' -56.9 NC_005262.1 + 15888 0.68 0.53831
Target:  5'- gCGCUGAuCCgCCGCgUGCGCGCgACGUg -3'
miRNA:   3'- aGUGGUU-GG-GGUGgAUGCGCG-UGCAg -5'
24004 3' -56.9 NC_005262.1 + 32773 0.68 0.563609
Target:  5'- aUCGCCGACaagcucgaCACCggcgGCGCGCcggccaucgcguucgACGUCg -3'
miRNA:   3'- -AGUGGUUGgg------GUGGa---UGCGCG---------------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 44516 0.68 0.548808
Target:  5'- -gGCCAGCCUgAUCgcCGCGCugauCGUCu -3'
miRNA:   3'- agUGGUUGGGgUGGauGCGCGu---GCAG- -5'
24004 3' -56.9 NC_005262.1 + 34021 0.68 0.51753
Target:  5'- aCGCCGGgCCgCAUCgUGCGC-CGCGUCg -3'
miRNA:   3'- aGUGGUUgGG-GUGG-AUGCGcGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.