Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24004 | 3' | -56.9 | NC_005262.1 | + | 57770 | 0.71 | 0.392139 |
Target: 5'- gCACCuuGCCgCGCCcgGCGCGCGagaaGUCg -3' miRNA: 3'- aGUGGu-UGGgGUGGa-UGCGCGUg---CAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 42783 | 0.71 | 0.383331 |
Target: 5'- -gGCCAGCCCUACau-CGUcuccgGCGCGUCg -3' miRNA: 3'- agUGGUUGGGGUGgauGCG-----CGUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 11189 | 0.71 | 0.374655 |
Target: 5'- gCACCAuuGCCCCGCCaaGCGUGCcaGCGg- -3' miRNA: 3'- aGUGGU--UGGGGUGGa-UGCGCG--UGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 49472 | 0.71 | 0.366113 |
Target: 5'- gUugCGACgCCCGCggugaugaACGCGCGCGUCg -3' miRNA: 3'- aGugGUUG-GGGUGga------UGCGCGUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 46794 | 0.71 | 0.357707 |
Target: 5'- gCGCCGGCUuguCCA-CUGCGCGCGCGg- -3' miRNA: 3'- aGUGGUUGG---GGUgGAUGCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 62888 | 0.71 | 0.383331 |
Target: 5'- aCACCAucaCCCGCCaGCGCGC-CGa- -3' miRNA: 3'- aGUGGUug-GGGUGGaUGCGCGuGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 59639 | 0.71 | 0.357707 |
Target: 5'- gCGCCAGUCUCuCCU-CGCGCugGUCg -3' miRNA: 3'- aGUGGUUGGGGuGGAuGCGCGugCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 11460 | 0.71 | 0.357707 |
Target: 5'- gCAUCGugCCUACCgcgcuCGCGCGCGa- -3' miRNA: 3'- aGUGGUugGGGUGGau---GCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 35089 | 0.71 | 0.357707 |
Target: 5'- gUCAUCAACUCgCugCUGCGUG-GCGUCg -3' miRNA: 3'- -AGUGGUUGGG-GugGAUGCGCgUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 58918 | 0.71 | 0.383331 |
Target: 5'- cCGgCGGCCCgACCgaugGCGCGCGCuUCu -3' miRNA: 3'- aGUgGUUGGGgUGGa---UGCGCGUGcAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 6228 | 0.71 | 0.401078 |
Target: 5'- cCGCCGagaugcugaAgCCCGCC-GCGCGCACGgUCu -3' miRNA: 3'- aGUGGU---------UgGGGUGGaUGCGCGUGC-AG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 49171 | 0.7 | 0.438096 |
Target: 5'- gCAUCGGCCgCAgCgGCGCGCACGg- -3' miRNA: 3'- aGUGGUUGGgGUgGaUGCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 41212 | 0.7 | 0.438096 |
Target: 5'- gUCGuCCGAgCgCGCCgugACGCGCACGaUCu -3' miRNA: 3'- -AGU-GGUUgGgGUGGa--UGCGCGUGC-AG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 57856 | 0.7 | 0.410146 |
Target: 5'- cUCGCCAACCagcaCGCCauUGCGCGCAa--- -3' miRNA: 3'- -AGUGGUUGGg---GUGG--AUGCGCGUgcag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 27050 | 0.7 | 0.41934 |
Target: 5'- cCAUCGACCUCACgcgCUACGCGUuCGUg -3' miRNA: 3'- aGUGGUUGGGGUG---GAUGCGCGuGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 43929 | 0.7 | 0.451508 |
Target: 5'- -uGCCGGCCaCCGCC-GCGCGCGgccggcccgcggccgUGUCg -3' miRNA: 3'- agUGGUUGG-GGUGGaUGCGCGU---------------GCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 23916 | 0.7 | 0.41934 |
Target: 5'- -uGCCGGCCUacguugccgagUACCUGCGCGU-CGUCu -3' miRNA: 3'- agUGGUUGGG-----------GUGGAUGCGCGuGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 53544 | 0.7 | 0.438096 |
Target: 5'- uUCGCCGcguACCCCgagaugguGCUcgGCGCGCACG-Cg -3' miRNA: 3'- -AGUGGU---UGGGG--------UGGa-UGCGCGUGCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 55568 | 0.7 | 0.438096 |
Target: 5'- gCAUCGACCCgGCCggcucGCaGCGCGCGa- -3' miRNA: 3'- aGUGGUUGGGgUGGa----UG-CGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 28145 | 0.7 | 0.441905 |
Target: 5'- cUCGCCAucuuCCCCGagcgcgcggcgcaaCUGCGCGCGgcggcCGUCg -3' miRNA: 3'- -AGUGGUu---GGGGUg-------------GAUGCGCGU-----GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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