miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 21313 1.09 0.000883
Target:  5'- cUCACCAACCCCACCUACGCGCACGUCc -3'
miRNA:   3'- -AGUGGUUGGGGUGGAUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 24372 0.79 0.124561
Target:  5'- cCugCAACCCUgucgacgccaaACCggcgGCGCGCACGUCc -3'
miRNA:   3'- aGugGUUGGGG-----------UGGa---UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 1075 0.78 0.138936
Target:  5'- aCACC-GCCCCGCC--CGCGCAgGUCg -3'
miRNA:   3'- aGUGGuUGGGGUGGauGCGCGUgCAG- -5'
24004 3' -56.9 NC_005262.1 + 40660 0.77 0.167791
Target:  5'- gUCAgCGACCCgACCcACGCGCauaGCGUCu -3'
miRNA:   3'- -AGUgGUUGGGgUGGaUGCGCG---UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 51281 0.76 0.191583
Target:  5'- cUCACCGGCCgCCGgCUGCuGCGCAUGcCg -3'
miRNA:   3'- -AGUGGUUGG-GGUgGAUG-CGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 44251 0.74 0.235789
Target:  5'- cUCGCCGccgcgcuccuGCCCgAUC-GCGCGCGCGUCc -3'
miRNA:   3'- -AGUGGU----------UGGGgUGGaUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 35977 0.74 0.254456
Target:  5'- -uGCCGGCCCCguggaugaGCCgauagGUGCGCGCGUCg -3'
miRNA:   3'- agUGGUUGGGG--------UGGa----UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 4885 0.73 0.281211
Target:  5'- gCGCCGACUCgACCUGCuucgGCGUgACGUCg -3'
miRNA:   3'- aGUGGUUGGGgUGGAUG----CGCG-UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 31255 0.73 0.288239
Target:  5'- gUCGCCGAucuucacgcUCUCACCUACGCGCAguUCg -3'
miRNA:   3'- -AGUGGUU---------GGGGUGGAUGCGCGUgcAG- -5'
24004 3' -56.9 NC_005262.1 + 4798 0.72 0.310151
Target:  5'- cUCACCAACCCgCACUUGCGCa-ACGa- -3'
miRNA:   3'- -AGUGGUUGGG-GUGGAUGCGcgUGCag -5'
24004 3' -56.9 NC_005262.1 + 33786 0.72 0.310151
Target:  5'- cUACCGACCUCAUCgcuCGCGCgggcaACGUCc -3'
miRNA:   3'- aGUGGUUGGGGUGGau-GCGCG-----UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 46677 0.72 0.310903
Target:  5'- gCACCGACgCCCGCCgaugcagucagcgccGCGCGCGCa-- -3'
miRNA:   3'- aGUGGUUG-GGGUGGa--------------UGCGCGUGcag -5'
24004 3' -56.9 NC_005262.1 + 6519 0.72 0.32545
Target:  5'- gCGCCGACCUCGCCgucACGCuCGCGg- -3'
miRNA:   3'- aGUGGUUGGGGUGGa--UGCGcGUGCag -5'
24004 3' -56.9 NC_005262.1 + 61239 0.72 0.32545
Target:  5'- cUCGCCcGCCgCCGCgaucugCUGCGCcaGCGCGUCg -3'
miRNA:   3'- -AGUGGuUGG-GGUG------GAUGCG--CGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 31484 0.72 0.32545
Target:  5'- cCGCCGACCUCGCCgucgACGUccGCAagaaGUCg -3'
miRNA:   3'- aGUGGUUGGGGUGGa---UGCG--CGUg---CAG- -5'
24004 3' -56.9 NC_005262.1 + 48042 0.72 0.333307
Target:  5'- -aGCCGGCCgCGCCcGCaaGCGCGUCg -3'
miRNA:   3'- agUGGUUGGgGUGGaUGcgCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 33973 0.72 0.341303
Target:  5'- cCGCCGGCCgaCGCaCgaucgucucGCGCGCGCGUCg -3'
miRNA:   3'- aGUGGUUGGg-GUG-Ga--------UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 33229 0.71 0.357707
Target:  5'- aUUGCCGACgUCAacaucgACGCGCACGUCg -3'
miRNA:   3'- -AGUGGUUGgGGUgga---UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 59639 0.71 0.357707
Target:  5'- gCGCCAGUCUCuCCU-CGCGCugGUCg -3'
miRNA:   3'- aGUGGUUGGGGuGGAuGCGCGugCAG- -5'
24004 3' -56.9 NC_005262.1 + 35089 0.71 0.357707
Target:  5'- gUCAUCAACUCgCugCUGCGUG-GCGUCg -3'
miRNA:   3'- -AGUGGUUGGG-GugGAUGCGCgUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.