miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 11460 0.71 0.357707
Target:  5'- gCAUCGugCCUACCgcgcuCGCGCGCGa- -3'
miRNA:   3'- aGUGGUugGGGUGGau---GCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 59639 0.71 0.357707
Target:  5'- gCGCCAGUCUCuCCU-CGCGCugGUCg -3'
miRNA:   3'- aGUGGUUGGGGuGGAuGCGCGugCAG- -5'
24004 3' -56.9 NC_005262.1 + 49472 0.71 0.366113
Target:  5'- gUugCGACgCCCGCggugaugaACGCGCGCGUCg -3'
miRNA:   3'- aGugGUUG-GGGUGga------UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 11189 0.71 0.374655
Target:  5'- gCACCAuuGCCCCGCCaaGCGUGCcaGCGg- -3'
miRNA:   3'- aGUGGU--UGGGGUGGa-UGCGCG--UGCag -5'
24004 3' -56.9 NC_005262.1 + 62888 0.71 0.383331
Target:  5'- aCACCAucaCCCGCCaGCGCGC-CGa- -3'
miRNA:   3'- aGUGGUug-GGGUGGaUGCGCGuGCag -5'
24004 3' -56.9 NC_005262.1 + 58918 0.71 0.383331
Target:  5'- cCGgCGGCCCgACCgaugGCGCGCGCuUCu -3'
miRNA:   3'- aGUgGUUGGGgUGGa---UGCGCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 42783 0.71 0.383331
Target:  5'- -gGCCAGCCCUACau-CGUcuccgGCGCGUCg -3'
miRNA:   3'- agUGGUUGGGGUGgauGCG-----CGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 57770 0.71 0.392139
Target:  5'- gCACCuuGCCgCGCCcgGCGCGCGagaaGUCg -3'
miRNA:   3'- aGUGGu-UGGgGUGGa-UGCGCGUg---CAG- -5'
24004 3' -56.9 NC_005262.1 + 6228 0.71 0.401078
Target:  5'- cCGCCGagaugcugaAgCCCGCC-GCGCGCACGgUCu -3'
miRNA:   3'- aGUGGU---------UgGGGUGGaUGCGCGUGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 36208 0.71 0.401078
Target:  5'- -uGCUcGCCUCGCCguauCGCGCAgCGUCg -3'
miRNA:   3'- agUGGuUGGGGUGGau--GCGCGU-GCAG- -5'
24004 3' -56.9 NC_005262.1 + 61495 0.71 0.401078
Target:  5'- cCGCCGcCUUCGCCU-CGCGCGCGa- -3'
miRNA:   3'- aGUGGUuGGGGUGGAuGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 57856 0.7 0.410146
Target:  5'- cUCGCCAACCagcaCGCCauUGCGCGCAa--- -3'
miRNA:   3'- -AGUGGUUGGg---GUGG--AUGCGCGUgcag -5'
24004 3' -56.9 NC_005262.1 + 23916 0.7 0.41934
Target:  5'- -uGCCGGCCUacguugccgagUACCUGCGCGU-CGUCu -3'
miRNA:   3'- agUGGUUGGG-----------GUGGAUGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 17638 0.7 0.41934
Target:  5'- cCGCCGcgGCUgCCGCCU-CGCGCGCGa- -3'
miRNA:   3'- aGUGGU--UGG-GGUGGAuGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 27050 0.7 0.41934
Target:  5'- cCAUCGACCUCACgcgCUACGCGUuCGUg -3'
miRNA:   3'- aGUGGUUGGGGUG---GAUGCGCGuGCAg -5'
24004 3' -56.9 NC_005262.1 + 55568 0.7 0.438096
Target:  5'- gCAUCGACCCgGCCggcucGCaGCGCGCGa- -3'
miRNA:   3'- aGUGGUUGGGgUGGa----UG-CGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 43050 0.7 0.438096
Target:  5'- aCAUCGACCCgGCCggcaccGCGCGcCGCGg- -3'
miRNA:   3'- aGUGGUUGGGgUGGa-----UGCGC-GUGCag -5'
24004 3' -56.9 NC_005262.1 + 53544 0.7 0.438096
Target:  5'- uUCGCCGcguACCCCgagaugguGCUcgGCGCGCACG-Cg -3'
miRNA:   3'- -AGUGGU---UGGGG--------UGGa-UGCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 26663 0.7 0.438096
Target:  5'- cCGCCAGCguaUGCCUGCGCgaacuggcgcaGCGCGUCg -3'
miRNA:   3'- aGUGGUUGgg-GUGGAUGCG-----------CGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 49171 0.7 0.438096
Target:  5'- gCAUCGGCCgCAgCgGCGCGCACGg- -3'
miRNA:   3'- aGUGGUUGGgGUgGaUGCGCGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.