miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 43050 0.7 0.438096
Target:  5'- aCAUCGACCCgGCCggcaccGCGCGcCGCGg- -3'
miRNA:   3'- aGUGGUUGGGgUGGa-----UGCGC-GUGCag -5'
24004 3' -56.9 NC_005262.1 + 28145 0.7 0.441905
Target:  5'- cUCGCCAucuuCCCCGagcgcgcggcgcaaCUGCGCGCGgcggcCGUCg -3'
miRNA:   3'- -AGUGGUu---GGGGUg-------------GAUGCGCGU-----GCAG- -5'
24004 3' -56.9 NC_005262.1 + 48204 0.7 0.447653
Target:  5'- aCGCCgAGCUCUugC-GCGCGgCGCGUCa -3'
miRNA:   3'- aGUGG-UUGGGGugGaUGCGC-GUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 11662 0.7 0.447653
Target:  5'- gCGCUGGCCgCCGCCggcauaGCaGCGCGCGUg -3'
miRNA:   3'- aGUGGUUGG-GGUGGa-----UG-CGCGUGCAg -5'
24004 3' -56.9 NC_005262.1 + 43929 0.7 0.451508
Target:  5'- -uGCCGGCCaCCGCC-GCGCGCGgccggcccgcggccgUGUCg -3'
miRNA:   3'- agUGGUUGG-GGUGGaUGCGCGU---------------GCAG- -5'
24004 3' -56.9 NC_005262.1 + 41248 0.69 0.457324
Target:  5'- -gGCgGugCCCuCCUGCGCGCGCu-- -3'
miRNA:   3'- agUGgUugGGGuGGAUGCGCGUGcag -5'
24004 3' -56.9 NC_005262.1 + 13110 0.69 0.457324
Target:  5'- gCACCGcguaGCCCUuggcgcgcuCCUGCGCGUacacccACGUCa -3'
miRNA:   3'- aGUGGU----UGGGGu--------GGAUGCGCG------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 42286 0.69 0.476996
Target:  5'- cCGCCGACgaUCAUCUucgGCGCGC-CGUCg -3'
miRNA:   3'- aGUGGUUGg-GGUGGA---UGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 53591 0.69 0.476996
Target:  5'- -gGCCGGCCCCugCgGCGUcuGCACuUCg -3'
miRNA:   3'- agUGGUUGGGGugGaUGCG--CGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 61779 0.69 0.485984
Target:  5'- gCGCCGACCgaccagcgcguuuUCGCCUGCGCgGCGCa-- -3'
miRNA:   3'- aGUGGUUGG-------------GGUGGAUGCG-CGUGcag -5'
24004 3' -56.9 NC_005262.1 + 2827 0.69 0.486987
Target:  5'- gCGCCucGACCUCGuuUGCGCGCugG-Cg -3'
miRNA:   3'- aGUGG--UUGGGGUggAUGCGCGugCaG- -5'
24004 3' -56.9 NC_005262.1 + 5273 0.69 0.486987
Target:  5'- gCGCCGGCCgCGCCcGCGCcCGCGa- -3'
miRNA:   3'- aGUGGUUGGgGUGGaUGCGcGUGCag -5'
24004 3' -56.9 NC_005262.1 + 16976 0.69 0.49404
Target:  5'- gCACCGAUauugCCCugCUgccgccggccgagcGCGCGCuCGUCg -3'
miRNA:   3'- aGUGGUUG----GGGugGA--------------UGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 36555 0.69 0.50726
Target:  5'- cCGCCAGCCUCGC--GCGCGCccauGCGcCa -3'
miRNA:   3'- aGUGGUUGGGGUGgaUGCGCG----UGCaG- -5'
24004 3' -56.9 NC_005262.1 + 45167 0.69 0.50726
Target:  5'- --gUCAACgUguCCUGCGCGCGCGUg -3'
miRNA:   3'- aguGGUUGgGguGGAUGCGCGUGCAg -5'
24004 3' -56.9 NC_005262.1 + 11770 0.69 0.50726
Target:  5'- -gGCgCGGCCCgACCUGgGCGCGC-UCc -3'
miRNA:   3'- agUG-GUUGGGgUGGAUgCGCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 41093 0.69 0.508283
Target:  5'- cUCGUCAACgCCGCCggccacgucgagauCGUGCGCGUCa -3'
miRNA:   3'- -AGUGGUUGgGGUGGau------------GCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 34021 0.68 0.51753
Target:  5'- aCGCCGGgCCgCAUCgUGCGC-CGCGUCg -3'
miRNA:   3'- aGUGGUUgGG-GUGG-AUGCGcGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 46876 0.68 0.51753
Target:  5'- gUCAUCGGCUcgCCGCCguugaUAC-CGCGCGUCg -3'
miRNA:   3'- -AGUGGUUGG--GGUGG-----AUGcGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 4216 0.68 0.53831
Target:  5'- gCGCCGuuuuuuuauGCCCgGCUUuCGCGCGCGg- -3'
miRNA:   3'- aGUGGU---------UGGGgUGGAuGCGCGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.