miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 50659 0.66 0.645214
Target:  5'- -aACCGGCUCCaguaaaggacGCCUACGCGgGCa-- -3'
miRNA:   3'- agUGGUUGGGG----------UGGAUGCGCgUGcag -5'
24004 3' -56.9 NC_005262.1 + 49360 0.66 0.645214
Target:  5'- cUCGCUgacGACUCgGCg-ACGCGCGCGUUc -3'
miRNA:   3'- -AGUGG---UUGGGgUGgaUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 45239 0.66 0.634428
Target:  5'- gCACgCAGCgCgagCGCCUuguCGCGCACGUUc -3'
miRNA:   3'- aGUG-GUUGgG---GUGGAu--GCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 50365 0.66 0.634428
Target:  5'- gUCACgGGCUCgGCCgGCGCGgGCG-Cg -3'
miRNA:   3'- -AGUGgUUGGGgUGGaUGCGCgUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 63597 0.66 0.634428
Target:  5'- cCGCCGcCCCCGCCgGCGUggaccaugaaGC-CGUCc -3'
miRNA:   3'- aGUGGUuGGGGUGGaUGCG----------CGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 24724 0.66 0.634428
Target:  5'- -aGCUGAUCgCGCUgGCGCGCGCGaUCg -3'
miRNA:   3'- agUGGUUGGgGUGGaUGCGCGUGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 58978 0.66 0.634428
Target:  5'- cCGCCGgcgGCCUCacGCCUccCGCGC-CGUCg -3'
miRNA:   3'- aGUGGU---UGGGG--UGGAu-GCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 61536 0.67 0.623641
Target:  5'- uUCGCCGuCCgCCGCCUucuuCGCG-ACGUg -3'
miRNA:   3'- -AGUGGUuGG-GGUGGAu---GCGCgUGCAg -5'
24004 3' -56.9 NC_005262.1 + 10664 0.67 0.623641
Target:  5'- gCGCCGcgcuGCUCCGCgguacgcugcggCUGCGCGCggccggucGCGUCg -3'
miRNA:   3'- aGUGGU----UGGGGUG------------GAUGCGCG--------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 2566 0.67 0.623641
Target:  5'- gUCGCCAAgCgcggCACC-ACGCGCAUGcUCa -3'
miRNA:   3'- -AGUGGUUgGg---GUGGaUGCGCGUGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 57205 0.67 0.623641
Target:  5'- cUCGCCGgaGCCCUugAgCUGCGUGC-CGUg -3'
miRNA:   3'- -AGUGGU--UGGGG--UgGAUGCGCGuGCAg -5'
24004 3' -56.9 NC_005262.1 + 11128 0.67 0.623641
Target:  5'- gCugCGGCCUgUugCUGCGCGCG-GUCu -3'
miRNA:   3'- aGugGUUGGG-GugGAUGCGCGUgCAG- -5'
24004 3' -56.9 NC_005262.1 + 36396 0.67 0.612861
Target:  5'- gCACCGGCCCCccaccgaagucgACCgAgGUGUucGCGUCg -3'
miRNA:   3'- aGUGGUUGGGG------------UGGaUgCGCG--UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 11179 0.67 0.612861
Target:  5'- aCGCCGACgacgCCGCCgugauCGUGCGCGcCa -3'
miRNA:   3'- aGUGGUUGg---GGUGGau---GCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 24550 0.67 0.612861
Target:  5'- aUCGCCGGCgugaUCCugCUGauCGCGUcCGUCg -3'
miRNA:   3'- -AGUGGUUG----GGGugGAU--GCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 24974 0.67 0.602097
Target:  5'- -gGCCGAgCUCGCCUucACGCGCcgGCGg- -3'
miRNA:   3'- agUGGUUgGGGUGGA--UGCGCG--UGCag -5'
24004 3' -56.9 NC_005262.1 + 39771 0.67 0.602097
Target:  5'- cCGCCAGCCgaCCAUCccgACGCGUAUcUCg -3'
miRNA:   3'- aGUGGUUGG--GGUGGa--UGCGCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 16275 0.67 0.602097
Target:  5'- aCACaAugCCUugCUGCGCGC-CGcUCg -3'
miRNA:   3'- aGUGgUugGGGugGAUGCGCGuGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 17238 0.67 0.602097
Target:  5'- cUUGCCGGCCUucucgaUugCgACGCGCGCGUUc -3'
miRNA:   3'- -AGUGGUUGGG------GugGaUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 13368 0.67 0.601021
Target:  5'- gCGCCAGCacggaauCCUgcGCCUGgGCGCGCG-Ca -3'
miRNA:   3'- aGUGGUUG-------GGG--UGGAUgCGCGUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.