miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 13368 0.67 0.601021
Target:  5'- gCGCCAGCacggaauCCUgcGCCUGgGCGCGCG-Ca -3'
miRNA:   3'- aGUGGUUG-------GGG--UGGAUgCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 53667 0.67 0.595649
Target:  5'- aUCGCCAACCugCCcgagggcaucuaucaGCCggGCGCGCagaacccggccGCGUCg -3'
miRNA:   3'- -AGUGGUUGG--GG---------------UGGa-UGCGCG-----------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 21785 0.67 0.591357
Target:  5'- aUCugCGugCCCGCgUACaGCaGCGCGg- -3'
miRNA:   3'- -AGugGUugGGGUGgAUG-CG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 22247 0.67 0.591357
Target:  5'- aCGCCGG-CCgGCCUGCGCaucacGC-CGUCg -3'
miRNA:   3'- aGUGGUUgGGgUGGAUGCG-----CGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 53166 0.67 0.591357
Target:  5'- aUCGgCAACCCgC-CCUuCGCGUcCGUCg -3'
miRNA:   3'- -AGUgGUUGGG-GuGGAuGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 17118 0.67 0.591357
Target:  5'- cCACCGcgcgGCgauggaCCACaagaACGCGCGCGUCg -3'
miRNA:   3'- aGUGGU----UGg-----GGUGga--UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 3 0.67 0.591357
Target:  5'- cUACUguuCCCCuCCUGCGCGggcgGCGUCg -3'
miRNA:   3'- aGUGGuu-GGGGuGGAUGCGCg---UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 9709 0.67 0.580651
Target:  5'- gCGCCaAACCCgagggCGCCaUACGCGU-CGUCa -3'
miRNA:   3'- aGUGG-UUGGG-----GUGG-AUGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 37798 0.67 0.580651
Target:  5'- uUCAC--GCCCCAUCUGCaCGC-CGUUa -3'
miRNA:   3'- -AGUGguUGGGGUGGAUGcGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 4689 0.67 0.580651
Target:  5'- gUCACC-GCCCguuCCUGCGgGCGC-UCa -3'
miRNA:   3'- -AGUGGuUGGGgu-GGAUGCgCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 23558 0.67 0.580651
Target:  5'- -gACCAACCgC-CCgcCGCGCGCGg- -3'
miRNA:   3'- agUGGUUGGgGuGGauGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 13197 0.67 0.579582
Target:  5'- -gGCUAACCCUgguCCgUGCGCGCaaccggcGCGUCc -3'
miRNA:   3'- agUGGUUGGGGu--GG-AUGCGCG-------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 5249 0.68 0.569985
Target:  5'- aCGCCGGCCgUCACCgaucaGCGCGC-CGa- -3'
miRNA:   3'- aGUGGUUGG-GGUGGa----UGCGCGuGCag -5'
24004 3' -56.9 NC_005262.1 + 28282 0.68 0.569985
Target:  5'- -gGCCGGCgCUgucGCCUAUGCGCGCa-- -3'
miRNA:   3'- agUGGUUGgGG---UGGAUGCGCGUGcag -5'
24004 3' -56.9 NC_005262.1 + 40633 0.68 0.569985
Target:  5'- gUCAaCGACCCCgGCC-ACGgGCACGg- -3'
miRNA:   3'- -AGUgGUUGGGG-UGGaUGCgCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 31904 0.68 0.569985
Target:  5'- aCGCgGGCaaCCCGCUcgACGCGCcggACGUCg -3'
miRNA:   3'- aGUGgUUG--GGGUGGa-UGCGCG---UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 32773 0.68 0.563609
Target:  5'- aUCGCCGACaagcucgaCACCggcgGCGCGCcggccaucgcguucgACGUCg -3'
miRNA:   3'- -AGUGGUUGgg------GUGGa---UGCGCG---------------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 34860 0.68 0.563609
Target:  5'- uUCACCGAUCCgccgagcucgagcggCGCCggcacgACGCGCAcCGUg -3'
miRNA:   3'- -AGUGGUUGGG---------------GUGGa-----UGCGCGU-GCAg -5'
24004 3' -56.9 NC_005262.1 + 50088 0.68 0.559368
Target:  5'- gCGCCGACCgaACCcGCGCcGCGCGa- -3'
miRNA:   3'- aGUGGUUGGggUGGaUGCG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 44516 0.68 0.548808
Target:  5'- -gGCCAGCCUgAUCgcCGCGCugauCGUCu -3'
miRNA:   3'- agUGGUUGGGgUGGauGCGCGu---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.