Results 61 - 80 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24004 | 3' | -56.9 | NC_005262.1 | + | 16013 | 0.68 | 0.548808 |
Target: 5'- gCACUuccuCCUCGCuCUGCggcgcaucgcgGCGCACGUCg -3' miRNA: 3'- aGUGGuu--GGGGUG-GAUG-----------CGCGUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 45104 | 0.68 | 0.542501 |
Target: 5'- cUCGCCAucuGCCgcguguuggcguccgCCGCCUGcCGCGCggacugcugcACGUCg -3' miRNA: 3'- -AGUGGU---UGG---------------GGUGGAU-GCGCG----------UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 15888 | 0.68 | 0.53831 |
Target: 5'- gCGCUGAuCCgCCGCgUGCGCGCgACGUg -3' miRNA: 3'- aGUGGUU-GG-GGUGgAUGCGCG-UGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 4216 | 0.68 | 0.53831 |
Target: 5'- gCGCCGuuuuuuuauGCCCgGCUUuCGCGCGCGg- -3' miRNA: 3'- aGUGGU---------UGGGgUGGAuGCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 46876 | 0.68 | 0.51753 |
Target: 5'- gUCAUCGGCUcgCCGCCguugaUAC-CGCGCGUCg -3' miRNA: 3'- -AGUGGUUGG--GGUGG-----AUGcGCGUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 34021 | 0.68 | 0.51753 |
Target: 5'- aCGCCGGgCCgCAUCgUGCGC-CGCGUCg -3' miRNA: 3'- aGUGGUUgGG-GUGG-AUGCGcGUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 41093 | 0.69 | 0.508283 |
Target: 5'- cUCGUCAACgCCGCCggccacgucgagauCGUGCGCGUCa -3' miRNA: 3'- -AGUGGUUGgGGUGGau------------GCGCGUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 36555 | 0.69 | 0.50726 |
Target: 5'- cCGCCAGCCUCGC--GCGCGCccauGCGcCa -3' miRNA: 3'- aGUGGUUGGGGUGgaUGCGCG----UGCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 45167 | 0.69 | 0.50726 |
Target: 5'- --gUCAACgUguCCUGCGCGCGCGUg -3' miRNA: 3'- aguGGUUGgGguGGAUGCGCGUGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 11770 | 0.69 | 0.50726 |
Target: 5'- -gGCgCGGCCCgACCUGgGCGCGC-UCc -3' miRNA: 3'- agUG-GUUGGGgUGGAUgCGCGUGcAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 16976 | 0.69 | 0.49404 |
Target: 5'- gCACCGAUauugCCCugCUgccgccggccgagcGCGCGCuCGUCg -3' miRNA: 3'- aGUGGUUG----GGGugGA--------------UGCGCGuGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 5273 | 0.69 | 0.486987 |
Target: 5'- gCGCCGGCCgCGCCcGCGCcCGCGa- -3' miRNA: 3'- aGUGGUUGGgGUGGaUGCGcGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 2827 | 0.69 | 0.486987 |
Target: 5'- gCGCCucGACCUCGuuUGCGCGCugG-Cg -3' miRNA: 3'- aGUGG--UUGGGGUggAUGCGCGugCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 61779 | 0.69 | 0.485984 |
Target: 5'- gCGCCGACCgaccagcgcguuuUCGCCUGCGCgGCGCa-- -3' miRNA: 3'- aGUGGUUGG-------------GGUGGAUGCG-CGUGcag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 42286 | 0.69 | 0.476996 |
Target: 5'- cCGCCGACgaUCAUCUucgGCGCGC-CGUCg -3' miRNA: 3'- aGUGGUUGg-GGUGGA---UGCGCGuGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 53591 | 0.69 | 0.476996 |
Target: 5'- -gGCCGGCCCCugCgGCGUcuGCACuUCg -3' miRNA: 3'- agUGGUUGGGGugGaUGCG--CGUGcAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 41248 | 0.69 | 0.457324 |
Target: 5'- -gGCgGugCCCuCCUGCGCGCGCu-- -3' miRNA: 3'- agUGgUugGGGuGGAUGCGCGUGcag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 13110 | 0.69 | 0.457324 |
Target: 5'- gCACCGcguaGCCCUuggcgcgcuCCUGCGCGUacacccACGUCa -3' miRNA: 3'- aGUGGU----UGGGGu--------GGAUGCGCG------UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 43929 | 0.7 | 0.451508 |
Target: 5'- -uGCCGGCCaCCGCC-GCGCGCGgccggcccgcggccgUGUCg -3' miRNA: 3'- agUGGUUGG-GGUGGaUGCGCGU---------------GCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 11662 | 0.7 | 0.447653 |
Target: 5'- gCGCUGGCCgCCGCCggcauaGCaGCGCGCGUg -3' miRNA: 3'- aGUGGUUGG-GGUGGa-----UG-CGCGUGCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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