miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 3 0.67 0.591357
Target:  5'- cUACUguuCCCCuCCUGCGCGggcgGCGUCg -3'
miRNA:   3'- aGUGGuu-GGGGuGGAUGCGCg---UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 1075 0.78 0.138936
Target:  5'- aCACC-GCCCCGCC--CGCGCAgGUCg -3'
miRNA:   3'- aGUGGuUGGGGUGGauGCGCGUgCAG- -5'
24004 3' -56.9 NC_005262.1 + 2566 0.67 0.623641
Target:  5'- gUCGCCAAgCgcggCACC-ACGCGCAUGcUCa -3'
miRNA:   3'- -AGUGGUUgGg---GUGGaUGCGCGUGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 2644 0.66 0.666741
Target:  5'- -gAUCGGCCCaUGCCUGCGCgGCgccgggcgGCGUCc -3'
miRNA:   3'- agUGGUUGGG-GUGGAUGCG-CG--------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 2827 0.69 0.486987
Target:  5'- gCGCCucGACCUCGuuUGCGCGCugG-Cg -3'
miRNA:   3'- aGUGG--UUGGGGUggAUGCGCGugCaG- -5'
24004 3' -56.9 NC_005262.1 + 4216 0.68 0.53831
Target:  5'- gCGCCGuuuuuuuauGCCCgGCUUuCGCGCGCGg- -3'
miRNA:   3'- aGUGGU---------UGGGgUGGAuGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 4689 0.67 0.580651
Target:  5'- gUCACC-GCCCguuCCUGCGgGCGC-UCa -3'
miRNA:   3'- -AGUGGuUGGGgu-GGAUGCgCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 4798 0.72 0.310151
Target:  5'- cUCACCAACCCgCACUUGCGCa-ACGa- -3'
miRNA:   3'- -AGUGGUUGGG-GUGGAUGCGcgUGCag -5'
24004 3' -56.9 NC_005262.1 + 4885 0.73 0.281211
Target:  5'- gCGCCGACUCgACCUGCuucgGCGUgACGUCg -3'
miRNA:   3'- aGUGGUUGGGgUGGAUG----CGCG-UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 5216 0.66 0.645214
Target:  5'- -gAUCAGCgCCGCCcguCGCGCAUGg- -3'
miRNA:   3'- agUGGUUGgGGUGGau-GCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 5249 0.68 0.569985
Target:  5'- aCGCCGGCCgUCACCgaucaGCGCGC-CGa- -3'
miRNA:   3'- aGUGGUUGG-GGUGGa----UGCGCGuGCag -5'
24004 3' -56.9 NC_005262.1 + 5273 0.69 0.486987
Target:  5'- gCGCCGGCCgCGCCcGCGCcCGCGa- -3'
miRNA:   3'- aGUGGUUGGgGUGGaUGCGcGUGCag -5'
24004 3' -56.9 NC_005262.1 + 6228 0.71 0.401078
Target:  5'- cCGCCGagaugcugaAgCCCGCC-GCGCGCACGgUCu -3'
miRNA:   3'- aGUGGU---------UgGGGUGGaUGCGCGUGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 6519 0.72 0.32545
Target:  5'- gCGCCGACCUCGCCgucACGCuCGCGg- -3'
miRNA:   3'- aGUGGUUGGGGUGGa--UGCGcGUGCag -5'
24004 3' -56.9 NC_005262.1 + 8153 0.66 0.688143
Target:  5'- -uGCCugauugcuCCCCACgCUcacccagaacGCGCGCuGCGUCa -3'
miRNA:   3'- agUGGuu------GGGGUG-GA----------UGCGCG-UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 9709 0.67 0.580651
Target:  5'- gCGCCaAACCCgagggCGCCaUACGCGU-CGUCa -3'
miRNA:   3'- aGUGG-UUGGG-----GUGG-AUGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 10577 0.66 0.677462
Target:  5'- cCGCCAugCUgGCgCUGC-UGCugGUCg -3'
miRNA:   3'- aGUGGUugGGgUG-GAUGcGCGugCAG- -5'
24004 3' -56.9 NC_005262.1 + 10664 0.67 0.623641
Target:  5'- gCGCCGcgcuGCUCCGCgguacgcugcggCUGCGCGCggccggucGCGUCg -3'
miRNA:   3'- aGUGGU----UGGGGUG------------GAUGCGCG--------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 11128 0.67 0.623641
Target:  5'- gCugCGGCCUgUugCUGCGCGCG-GUCu -3'
miRNA:   3'- aGugGUUGGG-GugGAUGCGCGUgCAG- -5'
24004 3' -56.9 NC_005262.1 + 11179 0.67 0.612861
Target:  5'- aCGCCGACgacgCCGCCgugauCGUGCGCGcCa -3'
miRNA:   3'- aGUGGUUGg---GGUGGau---GCGCGUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.