miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 11189 0.71 0.374655
Target:  5'- gCACCAuuGCCCCGCCaaGCGUGCcaGCGg- -3'
miRNA:   3'- aGUGGU--UGGGGUGGa-UGCGCG--UGCag -5'
24004 3' -56.9 NC_005262.1 + 11328 0.66 0.677462
Target:  5'- -aAUCGGCCCUccuccgcaagacGCCgcucgcGCGCGgCACGUCg -3'
miRNA:   3'- agUGGUUGGGG------------UGGa-----UGCGC-GUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 11460 0.71 0.357707
Target:  5'- gCAUCGugCCUACCgcgcuCGCGCGCGa- -3'
miRNA:   3'- aGUGGUugGGGUGGau---GCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 11662 0.7 0.447653
Target:  5'- gCGCUGGCCgCCGCCggcauaGCaGCGCGCGUg -3'
miRNA:   3'- aGUGGUUGG-GGUGGa-----UG-CGCGUGCAg -5'
24004 3' -56.9 NC_005262.1 + 11770 0.69 0.50726
Target:  5'- -gGCgCGGCCCgACCUGgGCGCGC-UCc -3'
miRNA:   3'- agUG-GUUGGGgUGGAUgCGCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 13110 0.69 0.457324
Target:  5'- gCACCGcguaGCCCUuggcgcgcuCCUGCGCGUacacccACGUCa -3'
miRNA:   3'- aGUGGU----UGGGGu--------GGAUGCGCG------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 13197 0.67 0.579582
Target:  5'- -gGCUAACCCUgguCCgUGCGCGCaaccggcGCGUCc -3'
miRNA:   3'- agUGGUUGGGGu--GG-AUGCGCG-------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 13368 0.67 0.601021
Target:  5'- gCGCCAGCacggaauCCUgcGCCUGgGCGCGCG-Ca -3'
miRNA:   3'- aGUGGUUG-------GGG--UGGAUgCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 15888 0.68 0.53831
Target:  5'- gCGCUGAuCCgCCGCgUGCGCGCgACGUg -3'
miRNA:   3'- aGUGGUU-GG-GGUGgAUGCGCG-UGCAg -5'
24004 3' -56.9 NC_005262.1 + 16013 0.68 0.548808
Target:  5'- gCACUuccuCCUCGCuCUGCggcgcaucgcgGCGCACGUCg -3'
miRNA:   3'- aGUGGuu--GGGGUG-GAUG-----------CGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 16275 0.67 0.602097
Target:  5'- aCACaAugCCUugCUGCGCGC-CGcUCg -3'
miRNA:   3'- aGUGgUugGGGugGAUGCGCGuGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 16976 0.69 0.49404
Target:  5'- gCACCGAUauugCCCugCUgccgccggccgagcGCGCGCuCGUCg -3'
miRNA:   3'- aGUGGUUG----GGGugGA--------------UGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 17118 0.67 0.591357
Target:  5'- cCACCGcgcgGCgauggaCCACaagaACGCGCGCGUCg -3'
miRNA:   3'- aGUGGU----UGg-----GGUGga--UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 17238 0.67 0.602097
Target:  5'- cUUGCCGGCCUucucgaUugCgACGCGCGCGUUc -3'
miRNA:   3'- -AGUGGUUGGG------GugGaUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 17638 0.7 0.41934
Target:  5'- cCGCCGcgGCUgCCGCCU-CGCGCGCGa- -3'
miRNA:   3'- aGUGGU--UGG-GGUGGAuGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 21313 1.09 0.000883
Target:  5'- cUCACCAACCCCACCUACGCGCACGUCc -3'
miRNA:   3'- -AGUGGUUGGGGUGGAUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 21435 0.66 0.684944
Target:  5'- gCGCgCGGCCuuggCCGCCUcgaucgccuccuggACGUGCGCGUa -3'
miRNA:   3'- aGUG-GUUGG----GGUGGA--------------UGCGCGUGCAg -5'
24004 3' -56.9 NC_005262.1 + 21785 0.67 0.591357
Target:  5'- aUCugCGugCCCGCgUACaGCaGCGCGg- -3'
miRNA:   3'- -AGugGUugGGGUGgAUG-CG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 22247 0.67 0.591357
Target:  5'- aCGCCGG-CCgGCCUGCGCaucacGC-CGUCg -3'
miRNA:   3'- aGUGGUUgGGgUGGAUGCG-----CGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 23558 0.67 0.580651
Target:  5'- -gACCAACCgC-CCgcCGCGCGCGg- -3'
miRNA:   3'- agUGGUUGGgGuGGauGCGCGUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.