miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 23916 0.7 0.41934
Target:  5'- -uGCCGGCCUacguugccgagUACCUGCGCGU-CGUCu -3'
miRNA:   3'- agUGGUUGGG-----------GUGGAUGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 24372 0.79 0.124561
Target:  5'- cCugCAACCCUgucgacgccaaACCggcgGCGCGCACGUCc -3'
miRNA:   3'- aGugGUUGGGG-----------UGGa---UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 24550 0.67 0.612861
Target:  5'- aUCGCCGGCgugaUCCugCUGauCGCGUcCGUCg -3'
miRNA:   3'- -AGUGGUUG----GGGugGAU--GCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 24724 0.66 0.634428
Target:  5'- -aGCUGAUCgCGCUgGCGCGCGCGaUCg -3'
miRNA:   3'- agUGGUUGGgGUGGaUGCGCGUGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 24974 0.67 0.602097
Target:  5'- -gGCCGAgCUCGCCUucACGCGCcgGCGg- -3'
miRNA:   3'- agUGGUUgGGGUGGA--UGCGCG--UGCag -5'
24004 3' -56.9 NC_005262.1 + 26663 0.7 0.438096
Target:  5'- cCGCCAGCguaUGCCUGCGCgaacuggcgcaGCGCGUCg -3'
miRNA:   3'- aGUGGUUGgg-GUGGAUGCG-----------CGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 27050 0.7 0.41934
Target:  5'- cCAUCGACCUCACgcgCUACGCGUuCGUg -3'
miRNA:   3'- aGUGGUUGGGGUG---GAUGCGCGuGCAg -5'
24004 3' -56.9 NC_005262.1 + 28145 0.7 0.441905
Target:  5'- cUCGCCAucuuCCCCGagcgcgcggcgcaaCUGCGCGCGgcggcCGUCg -3'
miRNA:   3'- -AGUGGUu---GGGGUg-------------GAUGCGCGU-----GCAG- -5'
24004 3' -56.9 NC_005262.1 + 28282 0.68 0.569985
Target:  5'- -gGCCGGCgCUgucGCCUAUGCGCGCa-- -3'
miRNA:   3'- agUGGUUGgGG---UGGAUGCGCGUGcag -5'
24004 3' -56.9 NC_005262.1 + 28438 0.66 0.688143
Target:  5'- gUugCGGCCCUugagGCgCUgcACGCGCACGg- -3'
miRNA:   3'- aGugGUUGGGG----UG-GA--UGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 28443 0.66 0.675321
Target:  5'- gCGCCGugCUCGCCgugucgccgaugAUGCGCAUG-Ca -3'
miRNA:   3'- aGUGGUugGGGUGGa-----------UGCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 29863 0.66 0.645214
Target:  5'- -gGCCGGCCUgACCgacgaggaGCGCGCGg- -3'
miRNA:   3'- agUGGUUGGGgUGGaug-----CGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 31255 0.73 0.288239
Target:  5'- gUCGCCGAucuucacgcUCUCACCUACGCGCAguUCg -3'
miRNA:   3'- -AGUGGUU---------GGGGUGGAUGCGCGUgcAG- -5'
24004 3' -56.9 NC_005262.1 + 31484 0.72 0.32545
Target:  5'- cCGCCGACCUCGCCgucgACGUccGCAagaaGUCg -3'
miRNA:   3'- aGUGGUUGGGGUGGa---UGCG--CGUg---CAG- -5'
24004 3' -56.9 NC_005262.1 + 31904 0.68 0.569985
Target:  5'- aCGCgGGCaaCCCGCUcgACGCGCcggACGUCg -3'
miRNA:   3'- aGUGgUUG--GGGUGGa-UGCGCG---UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 32773 0.68 0.563609
Target:  5'- aUCGCCGACaagcucgaCACCggcgGCGCGCcggccaucgcguucgACGUCg -3'
miRNA:   3'- -AGUGGUUGgg------GUGGa---UGCGCG---------------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 33229 0.71 0.357707
Target:  5'- aUUGCCGACgUCAacaucgACGCGCACGUCg -3'
miRNA:   3'- -AGUGGUUGgGGUgga---UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 33786 0.72 0.310151
Target:  5'- cUACCGACCUCAUCgcuCGCGCgggcaACGUCc -3'
miRNA:   3'- aGUGGUUGGGGUGGau-GCGCG-----UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 33973 0.72 0.341303
Target:  5'- cCGCCGGCCgaCGCaCgaucgucucGCGCGCGCGUCg -3'
miRNA:   3'- aGUGGUUGGg-GUG-Ga--------UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 34021 0.68 0.51753
Target:  5'- aCGCCGGgCCgCAUCgUGCGC-CGCGUCg -3'
miRNA:   3'- aGUGGUUgGG-GUGG-AUGCGcGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.