miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 63597 0.66 0.634428
Target:  5'- cCGCCGcCCCCGCCgGCGUggaccaugaaGC-CGUCc -3'
miRNA:   3'- aGUGGUuGGGGUGGaUGCG----------CGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 62888 0.71 0.383331
Target:  5'- aCACCAucaCCCGCCaGCGCGC-CGa- -3'
miRNA:   3'- aGUGGUug-GGGUGGaUGCGCGuGCag -5'
24004 3' -56.9 NC_005262.1 + 61779 0.69 0.485984
Target:  5'- gCGCCGACCgaccagcgcguuuUCGCCUGCGCgGCGCa-- -3'
miRNA:   3'- aGUGGUUGG-------------GGUGGAUGCG-CGUGcag -5'
24004 3' -56.9 NC_005262.1 + 61536 0.67 0.623641
Target:  5'- uUCGCCGuCCgCCGCCUucuuCGCG-ACGUg -3'
miRNA:   3'- -AGUGGUuGG-GGUGGAu---GCGCgUGCAg -5'
24004 3' -56.9 NC_005262.1 + 61495 0.71 0.401078
Target:  5'- cCGCCGcCUUCGCCU-CGCGCGCGa- -3'
miRNA:   3'- aGUGGUuGGGGUGGAuGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 61239 0.72 0.32545
Target:  5'- cUCGCCcGCCgCCGCgaucugCUGCGCcaGCGCGUCg -3'
miRNA:   3'- -AGUGGuUGG-GGUG------GAUGCG--CGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 59639 0.71 0.357707
Target:  5'- gCGCCAGUCUCuCCU-CGCGCugGUCg -3'
miRNA:   3'- aGUGGUUGGGGuGGAuGCGCGugCAG- -5'
24004 3' -56.9 NC_005262.1 + 58987 0.66 0.677462
Target:  5'- cCGCCGGCCUgAUC-GCGCaGCGCGg- -3'
miRNA:   3'- aGUGGUUGGGgUGGaUGCG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 58978 0.66 0.634428
Target:  5'- cCGCCGgcgGCCUCacGCCUccCGCGC-CGUCg -3'
miRNA:   3'- aGUGGU---UGGGG--UGGAu-GCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 58918 0.71 0.383331
Target:  5'- cCGgCGGCCCgACCgaugGCGCGCGCuUCu -3'
miRNA:   3'- aGUgGUUGGGgUGGa---UGCGCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 57856 0.7 0.410146
Target:  5'- cUCGCCAACCagcaCGCCauUGCGCGCAa--- -3'
miRNA:   3'- -AGUGGUUGGg---GUGG--AUGCGCGUgcag -5'
24004 3' -56.9 NC_005262.1 + 57770 0.71 0.392139
Target:  5'- gCACCuuGCCgCGCCcgGCGCGCGagaaGUCg -3'
miRNA:   3'- aGUGGu-UGGgGUGGa-UGCGCGUg---CAG- -5'
24004 3' -56.9 NC_005262.1 + 57205 0.67 0.623641
Target:  5'- cUCGCCGgaGCCCUugAgCUGCGUGC-CGUg -3'
miRNA:   3'- -AGUGGU--UGGGG--UgGAUGCGCGuGCAg -5'
24004 3' -56.9 NC_005262.1 + 56527 0.66 0.666741
Target:  5'- cCGCCGAUCagcaCGCgCUuuuugcccuCGCGCAUGUCg -3'
miRNA:   3'- aGUGGUUGGg---GUG-GAu--------GCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 55568 0.7 0.438096
Target:  5'- gCAUCGACCCgGCCggcucGCaGCGCGCGa- -3'
miRNA:   3'- aGUGGUUGGGgUGGa----UG-CGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 55121 0.66 0.666741
Target:  5'- aUCAUCGugaacgucuuGCCCgCGCCgaccGCGUGCGCGa- -3'
miRNA:   3'- -AGUGGU----------UGGG-GUGGa---UGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 54092 0.66 0.677462
Target:  5'- uUCAagaaCGACCCgCugCUGCGCcucgACGUCg -3'
miRNA:   3'- -AGUg---GUUGGG-GugGAUGCGcg--UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 53667 0.67 0.595649
Target:  5'- aUCGCCAACCugCCcgagggcaucuaucaGCCggGCGCGCagaacccggccGCGUCg -3'
miRNA:   3'- -AGUGGUUGG--GG---------------UGGa-UGCGCG-----------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 53591 0.69 0.476996
Target:  5'- -gGCCGGCCCCugCgGCGUcuGCACuUCg -3'
miRNA:   3'- agUGGUUGGGGugGaUGCG--CGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 53544 0.7 0.438096
Target:  5'- uUCGCCGcguACCCCgagaugguGCUcgGCGCGCACG-Cg -3'
miRNA:   3'- -AGUGGU---UGGGG--------UGGa-UGCGCGUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.