miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 53339 0.66 0.677462
Target:  5'- gCGCCGcuACCUCGCCgAC-CGCGCGa- -3'
miRNA:   3'- aGUGGU--UGGGGUGGaUGcGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 53166 0.67 0.591357
Target:  5'- aUCGgCAACCCgC-CCUuCGCGUcCGUCg -3'
miRNA:   3'- -AGUgGUUGGG-GuGGAuGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 52121 0.66 0.684944
Target:  5'- aCGCCGugaaGCCCUACCUGCugucguucugggagGCgGCGCG-Ca -3'
miRNA:   3'- aGUGGU----UGGGGUGGAUG--------------CG-CGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 51337 0.66 0.688143
Target:  5'- cUUGCCGuCCUUACCguagccgGCGCGCAUGa- -3'
miRNA:   3'- -AGUGGUuGGGGUGGa------UGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 51281 0.76 0.191583
Target:  5'- cUCACCGGCCgCCGgCUGCuGCGCAUGcCg -3'
miRNA:   3'- -AGUGGUUGG-GGUgGAUG-CGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 50659 0.66 0.645214
Target:  5'- -aACCGGCUCCaguaaaggacGCCUACGCGgGCa-- -3'
miRNA:   3'- agUGGUUGGGG----------UGGAUGCGCgUGcag -5'
24004 3' -56.9 NC_005262.1 + 50365 0.66 0.634428
Target:  5'- gUCACgGGCUCgGCCgGCGCGgGCG-Cg -3'
miRNA:   3'- -AGUGgUUGGGgUGGaUGCGCgUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 50088 0.68 0.559368
Target:  5'- gCGCCGACCgaACCcGCGCcGCGCGa- -3'
miRNA:   3'- aGUGGUUGGggUGGaUGCG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 49472 0.71 0.366113
Target:  5'- gUugCGACgCCCGCggugaugaACGCGCGCGUCg -3'
miRNA:   3'- aGugGUUG-GGGUGga------UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 49360 0.66 0.645214
Target:  5'- cUCGCUgacGACUCgGCg-ACGCGCGCGUUc -3'
miRNA:   3'- -AGUGG---UUGGGgUGgaUGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 49326 0.67 0.601021
Target:  5'- gUCGCgGACCUCGCgcgcggaCUGCGCGC-CGcCg -3'
miRNA:   3'- -AGUGgUUGGGGUG-------GAUGCGCGuGCaG- -5'
24004 3' -56.9 NC_005262.1 + 49171 0.7 0.438096
Target:  5'- gCAUCGGCCgCAgCgGCGCGCACGg- -3'
miRNA:   3'- aGUGGUUGGgGUgGaUGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 48204 0.7 0.447653
Target:  5'- aCGCCgAGCUCUugC-GCGCGgCGCGUCa -3'
miRNA:   3'- aGUGG-UUGGGGugGaUGCGC-GUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 48042 0.72 0.333307
Target:  5'- -aGCCGGCCgCGCCcGCaaGCGCGUCg -3'
miRNA:   3'- agUGGUUGGgGUGGaUGcgCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 47097 0.66 0.666741
Target:  5'- gCGCCcucgauguCgCCCAUCUGCGuCGCGCGcCa -3'
miRNA:   3'- aGUGGuu------G-GGGUGGAUGC-GCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 46876 0.68 0.51753
Target:  5'- gUCAUCGGCUcgCCGCCguugaUAC-CGCGCGUCg -3'
miRNA:   3'- -AGUGGUUGG--GGUGG-----AUGcGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 46794 0.71 0.357707
Target:  5'- gCGCCGGCUuguCCA-CUGCGCGCGCGg- -3'
miRNA:   3'- aGUGGUUGG---GGUgGAUGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 46677 0.72 0.310903
Target:  5'- gCACCGACgCCCGCCgaugcagucagcgccGCGCGCGCa-- -3'
miRNA:   3'- aGUGGUUG-GGGUGGa--------------UGCGCGUGcag -5'
24004 3' -56.9 NC_005262.1 + 45239 0.66 0.634428
Target:  5'- gCACgCAGCgCgagCGCCUuguCGCGCACGUUc -3'
miRNA:   3'- aGUG-GUUGgG---GUGGAu--GCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 45167 0.69 0.50726
Target:  5'- --gUCAACgUguCCUGCGCGCGCGUg -3'
miRNA:   3'- aguGGUUGgGguGGAUGCGCGUGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.