miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 33786 0.72 0.310151
Target:  5'- cUACCGACCUCAUCgcuCGCGCgggcaACGUCc -3'
miRNA:   3'- aGUGGUUGGGGUGGau-GCGCG-----UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 4885 0.73 0.281211
Target:  5'- gCGCCGACUCgACCUGCuucgGCGUgACGUCg -3'
miRNA:   3'- aGUGGUUGGGgUGGAUG----CGCG-UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 51281 0.76 0.191583
Target:  5'- cUCACCGGCCgCCGgCUGCuGCGCAUGcCg -3'
miRNA:   3'- -AGUGGUUGG-GGUgGAUG-CGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 40660 0.77 0.167791
Target:  5'- gUCAgCGACCCgACCcACGCGCauaGCGUCu -3'
miRNA:   3'- -AGUgGUUGGGgUGGaUGCGCG---UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 24372 0.79 0.124561
Target:  5'- cCugCAACCCUgucgacgccaaACCggcgGCGCGCACGUCc -3'
miRNA:   3'- aGugGUUGGGG-----------UGGa---UGCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 62888 0.71 0.383331
Target:  5'- aCACCAucaCCCGCCaGCGCGC-CGa- -3'
miRNA:   3'- aGUGGUug-GGGUGGaUGCGCGuGCag -5'
24004 3' -56.9 NC_005262.1 + 42783 0.71 0.383331
Target:  5'- -gGCCAGCCCUACau-CGUcuccgGCGCGUCg -3'
miRNA:   3'- agUGGUUGGGGUGgauGCG-----CGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 41093 0.69 0.508283
Target:  5'- cUCGUCAACgCCGCCggccacgucgagauCGUGCGCGUCa -3'
miRNA:   3'- -AGUGGUUGgGGUGGau------------GCGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 11770 0.69 0.50726
Target:  5'- -gGCgCGGCCCgACCUGgGCGCGC-UCc -3'
miRNA:   3'- agUG-GUUGGGgUGGAUgCGCGUGcAG- -5'
24004 3' -56.9 NC_005262.1 + 16976 0.69 0.49404
Target:  5'- gCACCGAUauugCCCugCUgccgccggccgagcGCGCGCuCGUCg -3'
miRNA:   3'- aGUGGUUG----GGGugGA--------------UGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 2827 0.69 0.486987
Target:  5'- gCGCCucGACCUCGuuUGCGCGCugG-Cg -3'
miRNA:   3'- aGUGG--UUGGGGUggAUGCGCGugCaG- -5'
24004 3' -56.9 NC_005262.1 + 61779 0.69 0.485984
Target:  5'- gCGCCGACCgaccagcgcguuuUCGCCUGCGCgGCGCa-- -3'
miRNA:   3'- aGUGGUUGG-------------GGUGGAUGCG-CGUGcag -5'
24004 3' -56.9 NC_005262.1 + 28145 0.7 0.441905
Target:  5'- cUCGCCAucuuCCCCGagcgcgcggcgcaaCUGCGCGCGgcggcCGUCg -3'
miRNA:   3'- -AGUGGUu---GGGGUg-------------GAUGCGCGU-----GCAG- -5'
24004 3' -56.9 NC_005262.1 + 55568 0.7 0.438096
Target:  5'- gCAUCGACCCgGCCggcucGCaGCGCGCGa- -3'
miRNA:   3'- aGUGGUUGGGgUGGa----UG-CGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 53544 0.7 0.438096
Target:  5'- uUCGCCGcguACCCCgagaugguGCUcgGCGCGCACG-Cg -3'
miRNA:   3'- -AGUGGU---UGGGG--------UGGa-UGCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 49171 0.7 0.438096
Target:  5'- gCAUCGGCCgCAgCgGCGCGCACGg- -3'
miRNA:   3'- aGUGGUUGGgGUgGaUGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 43050 0.7 0.438096
Target:  5'- aCAUCGACCCgGCCggcaccGCGCGcCGCGg- -3'
miRNA:   3'- aGUGGUUGGGgUGGa-----UGCGC-GUGCag -5'
24004 3' -56.9 NC_005262.1 + 27050 0.7 0.41934
Target:  5'- cCAUCGACCUCACgcgCUACGCGUuCGUg -3'
miRNA:   3'- aGUGGUUGGGGUG---GAUGCGCGuGCAg -5'
24004 3' -56.9 NC_005262.1 + 6228 0.71 0.401078
Target:  5'- cCGCCGagaugcugaAgCCCGCC-GCGCGCACGgUCu -3'
miRNA:   3'- aGUGGU---------UgGGGUGGaUGCGCGUGC-AG- -5'
24004 3' -56.9 NC_005262.1 + 58918 0.71 0.383331
Target:  5'- cCGgCGGCCCgACCgaugGCGCGCGCuUCu -3'
miRNA:   3'- aGUgGUUGGGgUGGa---UGCGCGUGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.