Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24004 | 3' | -56.9 | NC_005262.1 | + | 28438 | 0.66 | 0.688143 |
Target: 5'- gUugCGGCCCUugagGCgCUgcACGCGCACGg- -3' miRNA: 3'- aGugGUUGGGG----UG-GA--UGCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 61536 | 0.67 | 0.623641 |
Target: 5'- uUCGCCGuCCgCCGCCUucuuCGCG-ACGUg -3' miRNA: 3'- -AGUGGUuGG-GGUGGAu---GCGCgUGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 36396 | 0.67 | 0.612861 |
Target: 5'- gCACCGGCCCCccaccgaagucgACCgAgGUGUucGCGUCg -3' miRNA: 3'- aGUGGUUGGGG------------UGGaUgCGCG--UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 1075 | 0.78 | 0.138936 |
Target: 5'- aCACC-GCCCCGCC--CGCGCAgGUCg -3' miRNA: 3'- aGUGGuUGGGGUGGauGCGCGUgCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 58987 | 0.66 | 0.677462 |
Target: 5'- cCGCCGGCCUgAUC-GCGCaGCGCGg- -3' miRNA: 3'- aGUGGUUGGGgUGGaUGCG-CGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 10577 | 0.66 | 0.677462 |
Target: 5'- cCGCCAugCUgGCgCUGC-UGCugGUCg -3' miRNA: 3'- aGUGGUugGGgUG-GAUGcGCGugCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 35303 | 0.66 | 0.666741 |
Target: 5'- cCGCCGACCuCCGCauccuUGCGgACGUa -3' miRNA: 3'- aGUGGUUGG-GGUGgau--GCGCgUGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 47097 | 0.66 | 0.666741 |
Target: 5'- gCGCCcucgauguCgCCCAUCUGCGuCGCGCGcCa -3' miRNA: 3'- aGUGGuu------G-GGGUGGAUGC-GCGUGCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 5216 | 0.66 | 0.645214 |
Target: 5'- -gAUCAGCgCCGCCcguCGCGCAUGg- -3' miRNA: 3'- agUGGUUGgGGUGGau-GCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 10664 | 0.67 | 0.623641 |
Target: 5'- gCGCCGcgcuGCUCCGCgguacgcugcggCUGCGCGCggccggucGCGUCg -3' miRNA: 3'- aGUGGU----UGGGGUG------------GAUGCGCG--------UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 50365 | 0.66 | 0.634428 |
Target: 5'- gUCACgGGCUCgGCCgGCGCGgGCG-Cg -3' miRNA: 3'- -AGUGgUUGGGgUGGaUGCGCgUGCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 38691 | 0.66 | 0.655988 |
Target: 5'- --gUCAGCCCCuuagcaguuGCgaACGCGCACGcCa -3' miRNA: 3'- aguGGUUGGGG---------UGgaUGCGCGUGCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 51337 | 0.66 | 0.688143 |
Target: 5'- cUUGCCGuCCUUACCguagccgGCGCGCAUGa- -3' miRNA: 3'- -AGUGGUuGGGGUGGa------UGCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 57205 | 0.67 | 0.623641 |
Target: 5'- cUCGCCGgaGCCCUugAgCUGCGUGC-CGUg -3' miRNA: 3'- -AGUGGU--UGGGG--UgGAUGCGCGuGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 8153 | 0.66 | 0.688143 |
Target: 5'- -uGCCugauugcuCCCCACgCUcacccagaacGCGCGCuGCGUCa -3' miRNA: 3'- agUGGuu------GGGGUG-GA----------UGCGCG-UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 55121 | 0.66 | 0.666741 |
Target: 5'- aUCAUCGugaacgucuuGCCCgCGCCgaccGCGUGCGCGa- -3' miRNA: 3'- -AGUGGU----------UGGG-GUGGa---UGCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 2566 | 0.67 | 0.623641 |
Target: 5'- gUCGCCAAgCgcggCACC-ACGCGCAUGcUCa -3' miRNA: 3'- -AGUGGUUgGg---GUGGaUGCGCGUGC-AG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 11128 | 0.67 | 0.623641 |
Target: 5'- gCugCGGCCUgUugCUGCGCGCG-GUCu -3' miRNA: 3'- aGugGUUGGG-GugGAUGCGCGUgCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 21435 | 0.66 | 0.684944 |
Target: 5'- gCGCgCGGCCuuggCCGCCUcgaucgccuccuggACGUGCGCGUa -3' miRNA: 3'- aGUG-GUUGG----GGUGGA--------------UGCGCGUGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 56527 | 0.66 | 0.666741 |
Target: 5'- cCGCCGAUCagcaCGCgCUuuuugcccuCGCGCAUGUCg -3' miRNA: 3'- aGUGGUUGGg---GUG-GAu--------GCGCGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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