Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24004 | 3' | -56.9 | NC_005262.1 | + | 49326 | 0.67 | 0.601021 |
Target: 5'- gUCGCgGACCUCGCgcgcggaCUGCGCGC-CGcCg -3' miRNA: 3'- -AGUGgUUGGGGUG-------GAUGCGCGuGCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 36396 | 0.67 | 0.612861 |
Target: 5'- gCACCGGCCCCccaccgaagucgACCgAgGUGUucGCGUCg -3' miRNA: 3'- aGUGGUUGGGG------------UGGaUgCGCG--UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 38691 | 0.66 | 0.655988 |
Target: 5'- --gUCAGCCCCuuagcaguuGCgaACGCGCACGcCa -3' miRNA: 3'- aguGGUUGGGG---------UGgaUGCGCGUGCaG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 21435 | 0.66 | 0.684944 |
Target: 5'- gCGCgCGGCCuuggCCGCCUcgaucgccuccuggACGUGCGCGUa -3' miRNA: 3'- aGUG-GUUGG----GGUGGA--------------UGCGCGUGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 5273 | 0.69 | 0.486987 |
Target: 5'- gCGCCGGCCgCGCCcGCGCcCGCGa- -3' miRNA: 3'- aGUGGUUGGgGUGGaUGCGcGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 34860 | 0.68 | 0.563609 |
Target: 5'- uUCACCGAUCCgccgagcucgagcggCGCCggcacgACGCGCAcCGUg -3' miRNA: 3'- -AGUGGUUGGG---------------GUGGa-----UGCGCGU-GCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 61536 | 0.67 | 0.623641 |
Target: 5'- uUCGCCGuCCgCCGCCUucuuCGCG-ACGUg -3' miRNA: 3'- -AGUGGUuGG-GGUGGAu---GCGCgUGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 8153 | 0.66 | 0.688143 |
Target: 5'- -uGCCugauugcuCCCCACgCUcacccagaacGCGCGCuGCGUCa -3' miRNA: 3'- agUGGuu------GGGGUG-GA----------UGCGCG-UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 5249 | 0.68 | 0.569985 |
Target: 5'- aCGCCGGCCgUCACCgaucaGCGCGC-CGa- -3' miRNA: 3'- aGUGGUUGG-GGUGGa----UGCGCGuGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 51337 | 0.66 | 0.688143 |
Target: 5'- cUUGCCGuCCUUACCguagccgGCGCGCAUGa- -3' miRNA: 3'- -AGUGGUuGGGGUGGa------UGCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 11128 | 0.67 | 0.623641 |
Target: 5'- gCugCGGCCUgUugCUGCGCGCG-GUCu -3' miRNA: 3'- aGugGUUGGG-GugGAUGCGCGUgCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 21785 | 0.67 | 0.591357 |
Target: 5'- aUCugCGugCCCGCgUACaGCaGCGCGg- -3' miRNA: 3'- -AGugGUugGGGUGgAUG-CG-CGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 57205 | 0.67 | 0.623641 |
Target: 5'- cUCGCCGgaGCCCUugAgCUGCGUGC-CGUg -3' miRNA: 3'- -AGUGGU--UGGGG--UgGAUGCGCGuGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 5216 | 0.66 | 0.645214 |
Target: 5'- -gAUCAGCgCCGCCcguCGCGCAUGg- -3' miRNA: 3'- agUGGUUGgGGUGGau-GCGCGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 35303 | 0.66 | 0.666741 |
Target: 5'- cCGCCGACCuCCGCauccuUGCGgACGUa -3' miRNA: 3'- aGUGGUUGG-GGUGgau--GCGCgUGCAg -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 58987 | 0.66 | 0.677462 |
Target: 5'- cCGCCGGCCUgAUC-GCGCaGCGCGg- -3' miRNA: 3'- aGUGGUUGGGgUGGaUGCG-CGUGCag -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 13110 | 0.69 | 0.457324 |
Target: 5'- gCACCGcguaGCCCUuggcgcgcuCCUGCGCGUacacccACGUCa -3' miRNA: 3'- aGUGGU----UGGGGu--------GGAUGCGCG------UGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 42286 | 0.69 | 0.476996 |
Target: 5'- cCGCCGACgaUCAUCUucgGCGCGC-CGUCg -3' miRNA: 3'- aGUGGUUGg-GGUGGA---UGCGCGuGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 46876 | 0.68 | 0.51753 |
Target: 5'- gUCAUCGGCUcgCCGCCguugaUAC-CGCGCGUCg -3' miRNA: 3'- -AGUGGUUGG--GGUGG-----AUGcGCGUGCAG- -5' |
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24004 | 3' | -56.9 | NC_005262.1 | + | 16013 | 0.68 | 0.548808 |
Target: 5'- gCACUuccuCCUCGCuCUGCggcgcaucgcgGCGCACGUCg -3' miRNA: 3'- aGUGGuu--GGGGUG-GAUG-----------CGCGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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