miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 3' -56.9 NC_005262.1 + 49326 0.67 0.601021
Target:  5'- gUCGCgGACCUCGCgcgcggaCUGCGCGC-CGcCg -3'
miRNA:   3'- -AGUGgUUGGGGUG-------GAUGCGCGuGCaG- -5'
24004 3' -56.9 NC_005262.1 + 36396 0.67 0.612861
Target:  5'- gCACCGGCCCCccaccgaagucgACCgAgGUGUucGCGUCg -3'
miRNA:   3'- aGUGGUUGGGG------------UGGaUgCGCG--UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 38691 0.66 0.655988
Target:  5'- --gUCAGCCCCuuagcaguuGCgaACGCGCACGcCa -3'
miRNA:   3'- aguGGUUGGGG---------UGgaUGCGCGUGCaG- -5'
24004 3' -56.9 NC_005262.1 + 21435 0.66 0.684944
Target:  5'- gCGCgCGGCCuuggCCGCCUcgaucgccuccuggACGUGCGCGUa -3'
miRNA:   3'- aGUG-GUUGG----GGUGGA--------------UGCGCGUGCAg -5'
24004 3' -56.9 NC_005262.1 + 5273 0.69 0.486987
Target:  5'- gCGCCGGCCgCGCCcGCGCcCGCGa- -3'
miRNA:   3'- aGUGGUUGGgGUGGaUGCGcGUGCag -5'
24004 3' -56.9 NC_005262.1 + 34860 0.68 0.563609
Target:  5'- uUCACCGAUCCgccgagcucgagcggCGCCggcacgACGCGCAcCGUg -3'
miRNA:   3'- -AGUGGUUGGG---------------GUGGa-----UGCGCGU-GCAg -5'
24004 3' -56.9 NC_005262.1 + 61536 0.67 0.623641
Target:  5'- uUCGCCGuCCgCCGCCUucuuCGCG-ACGUg -3'
miRNA:   3'- -AGUGGUuGG-GGUGGAu---GCGCgUGCAg -5'
24004 3' -56.9 NC_005262.1 + 8153 0.66 0.688143
Target:  5'- -uGCCugauugcuCCCCACgCUcacccagaacGCGCGCuGCGUCa -3'
miRNA:   3'- agUGGuu------GGGGUG-GA----------UGCGCG-UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 5249 0.68 0.569985
Target:  5'- aCGCCGGCCgUCACCgaucaGCGCGC-CGa- -3'
miRNA:   3'- aGUGGUUGG-GGUGGa----UGCGCGuGCag -5'
24004 3' -56.9 NC_005262.1 + 51337 0.66 0.688143
Target:  5'- cUUGCCGuCCUUACCguagccgGCGCGCAUGa- -3'
miRNA:   3'- -AGUGGUuGGGGUGGa------UGCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 11128 0.67 0.623641
Target:  5'- gCugCGGCCUgUugCUGCGCGCG-GUCu -3'
miRNA:   3'- aGugGUUGGG-GugGAUGCGCGUgCAG- -5'
24004 3' -56.9 NC_005262.1 + 21785 0.67 0.591357
Target:  5'- aUCugCGugCCCGCgUACaGCaGCGCGg- -3'
miRNA:   3'- -AGugGUugGGGUGgAUG-CG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 57205 0.67 0.623641
Target:  5'- cUCGCCGgaGCCCUugAgCUGCGUGC-CGUg -3'
miRNA:   3'- -AGUGGU--UGGGG--UgGAUGCGCGuGCAg -5'
24004 3' -56.9 NC_005262.1 + 5216 0.66 0.645214
Target:  5'- -gAUCAGCgCCGCCcguCGCGCAUGg- -3'
miRNA:   3'- agUGGUUGgGGUGGau-GCGCGUGCag -5'
24004 3' -56.9 NC_005262.1 + 35303 0.66 0.666741
Target:  5'- cCGCCGACCuCCGCauccuUGCGgACGUa -3'
miRNA:   3'- aGUGGUUGG-GGUGgau--GCGCgUGCAg -5'
24004 3' -56.9 NC_005262.1 + 58987 0.66 0.677462
Target:  5'- cCGCCGGCCUgAUC-GCGCaGCGCGg- -3'
miRNA:   3'- aGUGGUUGGGgUGGaUGCG-CGUGCag -5'
24004 3' -56.9 NC_005262.1 + 13110 0.69 0.457324
Target:  5'- gCACCGcguaGCCCUuggcgcgcuCCUGCGCGUacacccACGUCa -3'
miRNA:   3'- aGUGGU----UGGGGu--------GGAUGCGCG------UGCAG- -5'
24004 3' -56.9 NC_005262.1 + 42286 0.69 0.476996
Target:  5'- cCGCCGACgaUCAUCUucgGCGCGC-CGUCg -3'
miRNA:   3'- aGUGGUUGg-GGUGGA---UGCGCGuGCAG- -5'
24004 3' -56.9 NC_005262.1 + 46876 0.68 0.51753
Target:  5'- gUCAUCGGCUcgCCGCCguugaUAC-CGCGCGUCg -3'
miRNA:   3'- -AGUGGUUGG--GGUGG-----AUGcGCGUGCAG- -5'
24004 3' -56.9 NC_005262.1 + 16013 0.68 0.548808
Target:  5'- gCACUuccuCCUCGCuCUGCggcgcaucgcgGCGCACGUCg -3'
miRNA:   3'- aGUGGuu--GGGGUG-GAUG-----------CGCGUGCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.