Results 1 - 20 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24004 | 5' | -63 | NC_005262.1 | + | 4531 | 0.66 | 0.389292 |
Target: 5'- -gGGGGuuGUacaGGGGCuucaucgugCGCGCGCGGCg -3' miRNA: 3'- agCUCCgcCGg--UUCCG---------GCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 28716 | 0.66 | 0.389292 |
Target: 5'- aCGAGuuccGCCGcgAGGCCGCGCGCc-- -3' miRNA: 3'- aGCUCcgc-CGGU--UCCGGCGCGCGucg -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 56879 | 0.66 | 0.389292 |
Target: 5'- cUCGAcGuCGGCCuucAGGCCG-GC-CAGCu -3' miRNA: 3'- -AGCUcC-GCCGGu--UCCGGCgCGcGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 12791 | 0.66 | 0.389292 |
Target: 5'- aCGcccGUGaGCauuGGGCgGCGCGCAGCc -3' miRNA: 3'- aGCuc-CGC-CGgu-UCCGgCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 7643 | 0.66 | 0.389292 |
Target: 5'- gUCGAcgccGGCGGCgAcGGCuaucucCGCGaGCGGCa -3' miRNA: 3'- -AGCU----CCGCCGgUuCCG------GCGCgCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 59218 | 0.66 | 0.389292 |
Target: 5'- gCGAcGCGGCCc-GGCCGguucgccucgGCGCGGUa -3' miRNA: 3'- aGCUcCGCCGGuuCCGGCg---------CGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 52521 | 0.66 | 0.389292 |
Target: 5'- cCGAGaaguCGGCCGAGGagauCGCgcugGCGCAGg -3' miRNA: 3'- aGCUCc---GCCGGUUCCg---GCG----CGCGUCg -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 12127 | 0.66 | 0.380851 |
Target: 5'- gUGAGGUcugccauGCCGGGGaCGCGCGCGa- -3' miRNA: 3'- aGCUCCGc------CGGUUCCgGCGCGCGUcg -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 57275 | 0.66 | 0.380851 |
Target: 5'- cUCGc-GCaGCuCAcGGcCCGCGUGCAGCa -3' miRNA: 3'- -AGCucCGcCG-GUuCC-GGCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 29762 | 0.66 | 0.380851 |
Target: 5'- uUCGcggguuGGGCGGgCugcgcGGgCGCGgGCGGCa -3' miRNA: 3'- -AGC------UCCGCCgGuu---CCgGCGCgCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 12752 | 0.66 | 0.380851 |
Target: 5'- aCG-GGCGcaggguucGCCGcGcGCCGCGCGC-GCu -3' miRNA: 3'- aGCuCCGC--------CGGUuC-CGGCGCGCGuCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 24989 | 0.66 | 0.375845 |
Target: 5'- gUCGAGGCGGCauuCGAGcGCgGUcuggaaaccuaaccaGUGguGCg -3' miRNA: 3'- -AGCUCCGCCG---GUUC-CGgCG---------------CGCguCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 48669 | 0.66 | 0.372533 |
Target: 5'- cCGAGGCGGCuCGcuucguucGGGUCGaGCaccuuGUAGCg -3' miRNA: 3'- aGCUCCGCCG-GU--------UCCGGCgCG-----CGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 51256 | 0.66 | 0.372533 |
Target: 5'- gUCGucGGCuGCCu--GCUGCGCGCucGGCg -3' miRNA: 3'- -AGCu-CCGcCGGuucCGGCGCGCG--UCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 11640 | 0.66 | 0.372533 |
Target: 5'- aUCGGcucGGCGGCgCcGGcGUCGCGCuGCAcGCu -3' miRNA: 3'- -AGCU---CCGCCG-GuUC-CGGCGCG-CGU-CG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 8090 | 0.66 | 0.372533 |
Target: 5'- aUCGGGGCacuGGuUCGAGGUCGggaaGCGCAagaGCa -3' miRNA: 3'- -AGCUCCG---CC-GGUUCCGGCg---CGCGU---CG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 50404 | 0.66 | 0.372533 |
Target: 5'- gCGcGGCGaucagcGCCGcggagcgcgaGGGCCGCGUGCAcGUc -3' miRNA: 3'- aGCuCCGC------CGGU----------UCCGGCGCGCGU-CG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 1246 | 0.66 | 0.372533 |
Target: 5'- gCGcAGGauGgCAAGcCCGCGCgGCAGCa -3' miRNA: 3'- aGC-UCCgcCgGUUCcGGCGCG-CGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 53428 | 0.66 | 0.372533 |
Target: 5'- uUCGc-GCGGUCGgcgAGGUagcggCGCGCGCGGUc -3' miRNA: 3'- -AGCucCGCCGGU---UCCG-----GCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 57417 | 0.66 | 0.370062 |
Target: 5'- cCGAgaaGGCGGCCGacaacgcuccGGcaccguccgcggauGCCGCG-GCGGCg -3' miRNA: 3'- aGCU---CCGCCGGU----------UC--------------CGGCGCgCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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