miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 4531 0.66 0.389292
Target:  5'- -gGGGGuuGUacaGGGGCuucaucgugCGCGCGCGGCg -3'
miRNA:   3'- agCUCCgcCGg--UUCCG---------GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 12791 0.66 0.389292
Target:  5'- aCGcccGUGaGCauuGGGCgGCGCGCAGCc -3'
miRNA:   3'- aGCuc-CGC-CGgu-UCCGgCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 8090 0.66 0.372533
Target:  5'- aUCGGGGCacuGGuUCGAGGUCGggaaGCGCAagaGCa -3'
miRNA:   3'- -AGCUCCG---CC-GGUUCCGGCg---CGCGU---CG- -5'
24004 5' -63 NC_005262.1 + 45383 0.66 0.356271
Target:  5'- cUCG-GGUaGCaucuGGGCgGCGCaGCAGCa -3'
miRNA:   3'- -AGCuCCGcCGgu--UCCGgCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 52521 0.66 0.389292
Target:  5'- cCGAGaaguCGGCCGAGGagauCGCgcugGCGCAGg -3'
miRNA:   3'- aGCUCc---GCCGGUUCCg---GCG----CGCGUCg -5'
24004 5' -63 NC_005262.1 + 12752 0.66 0.380851
Target:  5'- aCG-GGCGcaggguucGCCGcGcGCCGCGCGC-GCu -3'
miRNA:   3'- aGCuCCGC--------CGGUuC-CGGCGCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 61 0.66 0.338196
Target:  5'- cCGGGGaGGCCGcgGcucgcgaagaagucGGCCGCGcCGCAcGCu -3'
miRNA:   3'- aGCUCCgCCGGU--U--------------CCGGCGC-GCGU-CG- -5'
24004 5' -63 NC_005262.1 + 4678 0.66 0.34833
Target:  5'- aUGccGCGGCCGgaucGGGCCGCG-GCAu- -3'
miRNA:   3'- aGCucCGCCGGU----UCCGGCGCgCGUcg -5'
24004 5' -63 NC_005262.1 + 28716 0.66 0.389292
Target:  5'- aCGAGuuccGCCGcgAGGCCGCGCGCc-- -3'
miRNA:   3'- aGCUCcgc-CGGU--UCCGGCGCGCGucg -5'
24004 5' -63 NC_005262.1 + 56879 0.66 0.389292
Target:  5'- cUCGAcGuCGGCCuucAGGCCG-GC-CAGCu -3'
miRNA:   3'- -AGCUcC-GCCGGu--UCCGGCgCGcGUCG- -5'
24004 5' -63 NC_005262.1 + 12314 0.66 0.356271
Target:  5'- uUCGAcGGCaugcGGCUcguGCCgcaGCGCGCGGCg -3'
miRNA:   3'- -AGCU-CCG----CCGGuucCGG---CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 29762 0.66 0.380851
Target:  5'- uUCGcggguuGGGCGGgCugcgcGGgCGCGgGCGGCa -3'
miRNA:   3'- -AGC------UCCGCCgGuu---CCgGCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 11640 0.66 0.372533
Target:  5'- aUCGGcucGGCGGCgCcGGcGUCGCGCuGCAcGCu -3'
miRNA:   3'- -AGCU---CCGCCG-GuUC-CGGCGCG-CGU-CG- -5'
24004 5' -63 NC_005262.1 + 24989 0.66 0.375845
Target:  5'- gUCGAGGCGGCauuCGAGcGCgGUcuggaaaccuaaccaGUGguGCg -3'
miRNA:   3'- -AGCUCCGCCG---GUUC-CGgCG---------------CGCguCG- -5'
24004 5' -63 NC_005262.1 + 57417 0.66 0.370062
Target:  5'- cCGAgaaGGCGGCCGacaacgcuccGGcaccguccgcggauGCCGCG-GCGGCg -3'
miRNA:   3'- aGCU---CCGCCGGU----------UC--------------CGGCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 50404 0.66 0.372533
Target:  5'- gCGcGGCGaucagcGCCGcggagcgcgaGGGCCGCGUGCAcGUc -3'
miRNA:   3'- aGCuCCGC------CGGU----------UCCGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 57275 0.66 0.380851
Target:  5'- cUCGc-GCaGCuCAcGGcCCGCGUGCAGCa -3'
miRNA:   3'- -AGCucCGcCG-GUuCC-GGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 7643 0.66 0.389292
Target:  5'- gUCGAcgccGGCGGCgAcGGCuaucucCGCGaGCGGCa -3'
miRNA:   3'- -AGCU----CCGCCGgUuCCG------GCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 56784 0.66 0.356271
Target:  5'- aUGAagcuGGcCGGCCugAAGGCCGaCGUcgaGCGGCu -3'
miRNA:   3'- aGCU----CC-GCCGG--UUCCGGC-GCG---CGUCG- -5'
24004 5' -63 NC_005262.1 + 59218 0.66 0.389292
Target:  5'- gCGAcGCGGCCc-GGCCGguucgccucgGCGCGGUa -3'
miRNA:   3'- aGCUcCGCCGGuuCCGGCg---------CGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.