miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 4418 0.66 0.34833
Target:  5'- cCGAuGGaCGGCCcgcGAGGCuCGC-CGUAGUc -3'
miRNA:   3'- aGCU-CC-GCCGG---UUCCG-GCGcGCGUCG- -5'
24004 5' -63 NC_005262.1 + 57275 0.66 0.380851
Target:  5'- cUCGc-GCaGCuCAcGGcCCGCGUGCAGCa -3'
miRNA:   3'- -AGCucCGcCG-GUuCC-GGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 50404 0.66 0.372533
Target:  5'- gCGcGGCGaucagcGCCGcggagcgcgaGGGCCGCGUGCAcGUc -3'
miRNA:   3'- aGCuCCGC------CGGU----------UCCGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 52521 0.66 0.389292
Target:  5'- cCGAGaaguCGGCCGAGGagauCGCgcugGCGCAGg -3'
miRNA:   3'- aGCUCc---GCCGGUUCCg---GCG----CGCGUCg -5'
24004 5' -63 NC_005262.1 + 12791 0.66 0.389292
Target:  5'- aCGcccGUGaGCauuGGGCgGCGCGCAGCc -3'
miRNA:   3'- aGCuc-CGC-CGgu-UCCGgCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 24989 0.66 0.375845
Target:  5'- gUCGAGGCGGCauuCGAGcGCgGUcuggaaaccuaaccaGUGguGCg -3'
miRNA:   3'- -AGCUCCGCCG---GUUC-CGgCG---------------CGCguCG- -5'
24004 5' -63 NC_005262.1 + 28716 0.66 0.389292
Target:  5'- aCGAGuuccGCCGcgAGGCCGCGCGCc-- -3'
miRNA:   3'- aGCUCcgc-CGGU--UCCGGCGCGCGucg -5'
24004 5' -63 NC_005262.1 + 11640 0.66 0.372533
Target:  5'- aUCGGcucGGCGGCgCcGGcGUCGCGCuGCAcGCu -3'
miRNA:   3'- -AGCU---CCGCCG-GuUC-CGGCGCG-CGU-CG- -5'
24004 5' -63 NC_005262.1 + 4531 0.66 0.389292
Target:  5'- -gGGGGuuGUacaGGGGCuucaucgugCGCGCGCGGCg -3'
miRNA:   3'- agCUCCgcCGg--UUCCG---------GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 7643 0.66 0.389292
Target:  5'- gUCGAcgccGGCGGCgAcGGCuaucucCGCGaGCGGCa -3'
miRNA:   3'- -AGCU----CCGCCGgUuCCG------GCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 61 0.66 0.338196
Target:  5'- cCGGGGaGGCCGcgGcucgcgaagaagucGGCCGCGcCGCAcGCu -3'
miRNA:   3'- aGCUCCgCCGGU--U--------------CCGGCGC-GCGU-CG- -5'
24004 5' -63 NC_005262.1 + 56879 0.66 0.389292
Target:  5'- cUCGAcGuCGGCCuucAGGCCG-GC-CAGCu -3'
miRNA:   3'- -AGCUcC-GCCGGu--UCCGGCgCGcGUCG- -5'
24004 5' -63 NC_005262.1 + 45383 0.66 0.356271
Target:  5'- cUCG-GGUaGCaucuGGGCgGCGCaGCAGCa -3'
miRNA:   3'- -AGCuCCGcCGgu--UCCGgCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 40333 0.67 0.330548
Target:  5'- uUCGAGcauCGGCuCAcGGCCGgCGCGCugaugucgaucgucGGCg -3'
miRNA:   3'- -AGCUCc--GCCG-GUuCCGGC-GCGCG--------------UCG- -5'
24004 5' -63 NC_005262.1 + 56912 0.67 0.332829
Target:  5'- cUCGccGGCGaGaUCAAGGCCGCGCucgagaAGCg -3'
miRNA:   3'- -AGCu-CCGC-C-GGUUCCGGCGCGcg----UCG- -5'
24004 5' -63 NC_005262.1 + 10701 0.67 0.296319
Target:  5'- ----cGCaGaUCGAGGCCGCGCGCAcGCg -3'
miRNA:   3'- agcucCGcC-GGUUCCGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 48476 0.67 0.303364
Target:  5'- gCGAGccgcGUGGgCAcGGGCgGCGCGaCGGCa -3'
miRNA:   3'- aGCUC----CGCCgGU-UCCGgCGCGC-GUCG- -5'
24004 5' -63 NC_005262.1 + 46690 0.67 0.332829
Target:  5'- cCGAuGCaGUCAGcGCCGCGCGC-GCa -3'
miRNA:   3'- aGCUcCGcCGGUUcCGGCGCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 1906 0.67 0.332829
Target:  5'- uUCGAGcGgGGCgGAGGgUGCGgGUuGCg -3'
miRNA:   3'- -AGCUC-CgCCGgUUCCgGCGCgCGuCG- -5'
24004 5' -63 NC_005262.1 + 36723 0.67 0.310538
Target:  5'- gUUGuGGgGGCUGGcGCCGCggGCGCAGUu -3'
miRNA:   3'- -AGCuCCgCCGGUUcCGGCG--CGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.