miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 22327 0.67 0.332829
Target:  5'- gCGcAGGcCGGCCGgcguGGGCgGCGCGgCcgugAGCu -3'
miRNA:   3'- aGC-UCC-GCCGGU----UCCGgCGCGC-G----UCG- -5'
24004 5' -63 NC_005262.1 + 46474 0.67 0.330548
Target:  5'- aCGAGGCGcGCCuguucGGCCuugauugcguccucGCGUucagccuucGCAGCg -3'
miRNA:   3'- aGCUCCGC-CGGuu---CCGG--------------CGCG---------CGUCG- -5'
24004 5' -63 NC_005262.1 + 16383 0.67 0.32527
Target:  5'- gUCGAucGGUugcacGCCGcGaGCgGCGCGCAGCa -3'
miRNA:   3'- -AGCU--CCGc----CGGUuC-CGgCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 31712 0.67 0.32527
Target:  5'- cCGuAGGuCGGCUu--GCCGCGCaGguGCa -3'
miRNA:   3'- aGC-UCC-GCCGGuucCGGCGCG-CguCG- -5'
24004 5' -63 NC_005262.1 + 11858 0.67 0.296319
Target:  5'- -gGAGcGCGcCCAggucGGGCCGCGC-CAGUu -3'
miRNA:   3'- agCUC-CGCcGGU----UCCGGCGCGcGUCG- -5'
24004 5' -63 NC_005262.1 + 49817 0.67 0.310538
Target:  5'- gUCGGuGCGGCUucGGCCGCcgguucgccGCcCGGCa -3'
miRNA:   3'- -AGCUcCGCCGGuuCCGGCG---------CGcGUCG- -5'
24004 5' -63 NC_005262.1 + 56912 0.67 0.332829
Target:  5'- cUCGccGGCGaGaUCAAGGCCGCGCucgagaAGCg -3'
miRNA:   3'- -AGCu-CCGC-C-GGUUCCGGCGCGcg----UCG- -5'
24004 5' -63 NC_005262.1 + 46690 0.67 0.332829
Target:  5'- cCGAuGCaGUCAGcGCCGCGCGC-GCa -3'
miRNA:   3'- aGCUcCGcCGGUUcCGGCGCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 1906 0.67 0.332829
Target:  5'- uUCGAGcGgGGCgGAGGgUGCGgGUuGCg -3'
miRNA:   3'- -AGCUC-CgCCGgUUCCgGCGCgCGuCG- -5'
24004 5' -63 NC_005262.1 + 40333 0.67 0.330548
Target:  5'- uUCGAGcauCGGCuCAcGGCCGgCGCGCugaugucgaucgucGGCg -3'
miRNA:   3'- -AGCUCc--GCCG-GUuCCGGC-GCGCG--------------UCG- -5'
24004 5' -63 NC_005262.1 + 36723 0.67 0.310538
Target:  5'- gUUGuGGgGGCUGGcGCCGCggGCGCAGUu -3'
miRNA:   3'- -AGCuCCgCCGGUUcCGGCG--CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 48476 0.67 0.303364
Target:  5'- gCGAGccgcGUGGgCAcGGGCgGCGCGaCGGCa -3'
miRNA:   3'- aGCUC----CGCCgGU-UCCGgCGCGC-GUCG- -5'
24004 5' -63 NC_005262.1 + 22657 0.67 0.324521
Target:  5'- -aGAGGCGGaauggcuUCAGGGCgcggaccaGUGCGCAGa -3'
miRNA:   3'- agCUCCGCC-------GGUUCCGg-------CGCGCGUCg -5'
24004 5' -63 NC_005262.1 + 29853 0.67 0.31784
Target:  5'- aCGAagauuuGGcCGGCCugaccgacGAGGa-GCGCGCGGCg -3'
miRNA:   3'- aGCU------CC-GCCGG--------UUCCggCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 10701 0.67 0.296319
Target:  5'- ----cGCaGaUCGAGGCCGCGCGCAcGCg -3'
miRNA:   3'- agcucCGcC-GGUUCCGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 38408 0.67 0.296319
Target:  5'- cCGAuGGCGacaCCAuccAGGCCG-GCGCGGUc -3'
miRNA:   3'- aGCU-CCGCc--GGU---UCCGGCgCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 49648 0.67 0.295622
Target:  5'- gCGAucGGCGGCCugcAAGGCgGCgGCauggggauggucgGCGGCg -3'
miRNA:   3'- aGCU--CCGCCGG---UUCCGgCG-CG-------------CGUCG- -5'
24004 5' -63 NC_005262.1 + 17081 0.67 0.32527
Target:  5'- aCGAGcGCGcGCUc-GGCCgGCG-GCAGCa -3'
miRNA:   3'- aGCUC-CGC-CGGuuCCGG-CGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 37724 0.68 0.256712
Target:  5'- aUGGGGCGugaAGGGCUGCGCGUcgaaggGGCa -3'
miRNA:   3'- aGCUCCGCcggUUCCGGCGCGCG------UCG- -5'
24004 5' -63 NC_005262.1 + 60371 0.68 0.262364
Target:  5'- cUGaAGGCGGCgAAGGUCGCcgGCcgcaagaucgucgGCGGCa -3'
miRNA:   3'- aGC-UCCGCCGgUUCCGGCG--CG-------------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.