miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 21349 1.11 0.000141
Target:  5'- aUCGAGGCGGCCAAGGCCGCGCGCAGCg -3'
miRNA:   3'- -AGCUCCGCCGGUUCCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 11020 0.86 0.013927
Target:  5'- gCGAGGCGGCugucgcgCAAGaCCGCGCGCAGCa -3'
miRNA:   3'- aGCUCCGCCG-------GUUCcGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 49217 0.85 0.016066
Target:  5'- cCGAgGGCGGCCucGGCgGCGCGCAGUc -3'
miRNA:   3'- aGCU-CCGCCGGuuCCGgCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 43938 0.84 0.019542
Target:  5'- cCGAGGUccugccGGCCAccGCCGCGCGCGGCc -3'
miRNA:   3'- aGCUCCG------CCGGUucCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 10528 0.82 0.027774
Target:  5'- -gGGGGCGGCCGaaacggcuaugccgAcgcgaccGGCCGCGCGCAGCc -3'
miRNA:   3'- agCUCCGCCGGU--------------U-------CCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 6339 0.81 0.033182
Target:  5'- aUCGAGGCGGCaAAGaCCguGCGCGCGGCg -3'
miRNA:   3'- -AGCUCCGCCGgUUCcGG--CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 43819 0.8 0.040284
Target:  5'- aUCGcGGCgacacGGCCGcgggccGGCCGCGCGCGGCg -3'
miRNA:   3'- -AGCuCCG-----CCGGUu-----CCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 17158 0.79 0.046248
Target:  5'- aUCGAGaaGGCCGgcaAGGCCGCGCGCGaggacGCg -3'
miRNA:   3'- -AGCUCcgCCGGU---UCCGGCGCGCGU-----CG- -5'
24004 5' -63 NC_005262.1 + 22777 0.78 0.050231
Target:  5'- gCGAGGCGGUCGAGGCgCGUcuGCGCAc- -3'
miRNA:   3'- aGCUCCGCCGGUUCCG-GCG--CGCGUcg -5'
24004 5' -63 NC_005262.1 + 25340 0.78 0.05307
Target:  5'- -aGAGGCGGCgCAGGaGCCggcguuGCGCGCGGUu -3'
miRNA:   3'- agCUCCGCCG-GUUC-CGG------CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 22217 0.77 0.059223
Target:  5'- cCGcGGCGGCCAGacgauugccGGCCaCGUGCAGCa -3'
miRNA:   3'- aGCuCCGCCGGUU---------CCGGcGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 59128 0.77 0.060866
Target:  5'- cCGAGGCgaaccGGCC-GGGCCGCGuCGCcGCg -3'
miRNA:   3'- aGCUCCG-----CCGGuUCCGGCGC-GCGuCG- -5'
24004 5' -63 NC_005262.1 + 17555 0.77 0.062553
Target:  5'- gCGAGGCGGCa---GCCGCG-GCGGCg -3'
miRNA:   3'- aGCUCCGCCGguucCGGCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 24202 0.76 0.073664
Target:  5'- cCGAGGCGGCa---GCCGCGaCGCuGCg -3'
miRNA:   3'- aGCUCCGCCGguucCGGCGC-GCGuCG- -5'
24004 5' -63 NC_005262.1 + 44972 0.76 0.079907
Target:  5'- cCGAGGCG---AGGGCCGaCGUGCAGCa -3'
miRNA:   3'- aGCUCCGCcggUUCCGGC-GCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 44815 0.75 0.08412
Target:  5'- gUCGAGauagucGCGGCCGAGcuGCauuuccuCGCGCGCGGCg -3'
miRNA:   3'- -AGCUC------CGCCGGUUC--CG-------GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 16600 0.75 0.084348
Target:  5'- gUCGAGGCGGCgAAGcaGCCGCGUuucgaGCugGGCg -3'
miRNA:   3'- -AGCUCCGCCGgUUC--CGGCGCG-----CG--UCG- -5'
24004 5' -63 NC_005262.1 + 44866 0.75 0.093943
Target:  5'- gUCGAGcuCGGCCu--GCCGCGCGCuGGCg -3'
miRNA:   3'- -AGCUCc-GCCGGuucCGGCGCGCG-UCG- -5'
24004 5' -63 NC_005262.1 + 60852 0.74 0.096499
Target:  5'- gCGuGGCgauGGCCGAGGCaauGCGCGCgaaAGCg -3'
miRNA:   3'- aGCuCCG---CCGGUUCCGg--CGCGCG---UCG- -5'
24004 5' -63 NC_005262.1 + 51192 0.74 0.096499
Target:  5'- aCGcGGCGGCCcgcuGGaGCCGCGCG-GGCg -3'
miRNA:   3'- aGCuCCGCCGGu---UC-CGGCGCGCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.