miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 51380 0.73 0.113264
Target:  5'- gCGAcGcCGGCCAAGGCCGCGCcugaccguguGCAccGCg -3'
miRNA:   3'- aGCUcC-GCCGGUUCCGGCGCG----------CGU--CG- -5'
24004 5' -63 NC_005262.1 + 17092 0.73 0.116003
Target:  5'- gUCGAcGCGGC--GGGCCGCgaggagguccaccGCGCGGCg -3'
miRNA:   3'- -AGCUcCGCCGguUCCGGCG-------------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 42086 0.73 0.116311
Target:  5'- uUCGAGGCGGgCGuucGUCGCguucuGCGCGGCg -3'
miRNA:   3'- -AGCUCCGCCgGUuc-CGGCG-----CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 62134 0.73 0.119434
Target:  5'- -gGAGGCGaugcGCCGcaucgaggaggAGGaUCGCGCGCGGCg -3'
miRNA:   3'- agCUCCGC----CGGU-----------UCC-GGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 53788 0.73 0.122635
Target:  5'- uUCGAcGCGGCCGGGuuCUGCGCGCccGGCu -3'
miRNA:   3'- -AGCUcCGCCGGUUCc-GGCGCGCG--UCG- -5'
24004 5' -63 NC_005262.1 + 26531 0.73 0.125584
Target:  5'- cCGAcaagaccGGCGGCCAcuccgaagcGGCCGaCGCGCuGCg -3'
miRNA:   3'- aGCU-------CCGCCGGUu--------CCGGC-GCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 2770 0.73 0.127251
Target:  5'- cUCGAgcgugagcuugcuacGGCGGCCAGGacGCCGCccgGCGCcGCg -3'
miRNA:   3'- -AGCU---------------CCGCCGGUUC--CGGCG---CGCGuCG- -5'
24004 5' -63 NC_005262.1 + 60607 0.73 0.128938
Target:  5'- gUCGAccgucacgcucuuGGCGGCCugcGCCGCGCGgccCGGCg -3'
miRNA:   3'- -AGCU-------------CCGCCGGuucCGGCGCGC---GUCG- -5'
24004 5' -63 NC_005262.1 + 33795 0.73 0.130646
Target:  5'- cUCGAucuucauguuGGCGGCCGGgaccuugccgaauuuGGCCGUGUacGCGGCg -3'
miRNA:   3'- -AGCU----------CCGCCGGUU---------------CCGGCGCG--CGUCG- -5'
24004 5' -63 NC_005262.1 + 8299 0.73 0.132722
Target:  5'- gCGAGGCGGCCAagaAGGUgaagaaGauCGCAGCg -3'
miRNA:   3'- aGCUCCGCCGGU---UCCGg-----CgcGCGUCG- -5'
24004 5' -63 NC_005262.1 + 17594 0.72 0.136251
Target:  5'- gUCGucAGGCuGCCGAucgacGcGUCGCGCGCGGCg -3'
miRNA:   3'- -AGC--UCCGcCGGUU-----C-CGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 59013 0.72 0.136251
Target:  5'- cCGAGaagcGCGcGCCAucggucGGGCCGCcggccugaucGCGCAGCg -3'
miRNA:   3'- aGCUC----CGC-CGGU------UCCGGCG----------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 57658 0.72 0.136251
Target:  5'- cUCGAucGGCGGCaCGAucgacuucucgcGcGCCGgGCGCGGCa -3'
miRNA:   3'- -AGCU--CCGCCG-GUU------------C-CGGCgCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 57790 0.72 0.137327
Target:  5'- gUCGuGGCGGCCuaccgaaagcaccuuGCCGCGCcCGGCg -3'
miRNA:   3'- -AGCuCCGCCGGuuc------------CGGCGCGcGUCG- -5'
24004 5' -63 NC_005262.1 + 11130 0.72 0.139866
Target:  5'- aCGcuGCGGCCuguuGCUGCGCGCGGUc -3'
miRNA:   3'- aGCucCGCCGGuuc-CGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 5307 0.72 0.139866
Target:  5'- gUCGAGGCGGUCGGagcuGGCCG-GCaGgAGCu -3'
miRNA:   3'- -AGCUCCGCCGGUU----CCGGCgCG-CgUCG- -5'
24004 5' -63 NC_005262.1 + 46630 0.72 0.143569
Target:  5'- gCGGgagcGGCGGCCGgcgccgcgcuGGGCUGCuGCGCGGg -3'
miRNA:   3'- aGCU----CCGCCGGU----------UCCGGCG-CGCGUCg -5'
24004 5' -63 NC_005262.1 + 26908 0.72 0.146214
Target:  5'- cCGucGCGGCCucgaauuccgaugcAAGGCCGgGCGCcucaAGCg -3'
miRNA:   3'- aGCucCGCCGG--------------UUCCGGCgCGCG----UCG- -5'
24004 5' -63 NC_005262.1 + 15587 0.72 0.147361
Target:  5'- -gGAGGCGcgcgcGCgCGAGGagCGCGUGCGGCa -3'
miRNA:   3'- agCUCCGC-----CG-GUUCCg-GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 6391 0.72 0.15522
Target:  5'- -aGAGGCGGCC--GGCgaGCGCaagaagGCGGCg -3'
miRNA:   3'- agCUCCGCCGGuuCCGg-CGCG------CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.