miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 2667 0.71 0.159291
Target:  5'- cCG-GGCGGCguccuGGCCGC-CGUAGCa -3'
miRNA:   3'- aGCuCCGCCGguu--CCGGCGcGCGUCG- -5'
24004 5' -63 NC_005262.1 + 5766 0.71 0.159291
Target:  5'- cUCGcGGCcauccggaaacaGGCCAucuuGcGCCGCGCGCAuGCa -3'
miRNA:   3'- -AGCuCCG------------CCGGUu---C-CGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 20594 0.71 0.163457
Target:  5'- gCGcGGCGcGCCGcaGGGCUGuUGCGUAGCc -3'
miRNA:   3'- aGCuCCGC-CGGU--UCCGGC-GCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 55745 0.71 0.163457
Target:  5'- uUCGugaccGGCGuGCCGGacgcGGCCacgaGCGCGCGGCc -3'
miRNA:   3'- -AGCu----CCGC-CGGUU----CCGG----CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 30772 0.71 0.163457
Target:  5'- -gGAGGCGGUCGAGcGCCGUccaGCGUccGCu -3'
miRNA:   3'- agCUCCGCCGGUUC-CGGCG---CGCGu-CG- -5'
24004 5' -63 NC_005262.1 + 8012 0.71 0.163457
Target:  5'- -gGAGGCGGCaAAGGCCcuccggcucGCGUcaggacugacGCAGCg -3'
miRNA:   3'- agCUCCGCCGgUUCCGG---------CGCG----------CGUCG- -5'
24004 5' -63 NC_005262.1 + 49772 0.71 0.172085
Target:  5'- cCGAGGCuccGGCCGcuGCCGCGC-CGGa -3'
miRNA:   3'- aGCUCCG---CCGGUucCGGCGCGcGUCg -5'
24004 5' -63 NC_005262.1 + 43667 0.71 0.172085
Target:  5'- aCGuGGCGaccugaacgcaaGCCAagccGGGCCGaauuCGCGCGGCg -3'
miRNA:   3'- aGCuCCGC------------CGGU----UCCGGC----GCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 45675 0.71 0.176098
Target:  5'- gUGAGGCGGucCCAAaacGGCCGCaucagguacagcaGCGCgAGCg -3'
miRNA:   3'- aGCUCCGCC--GGUU---CCGGCG-------------CGCG-UCG- -5'
24004 5' -63 NC_005262.1 + 46200 0.71 0.176098
Target:  5'- cUCGGGGUGGUagugcuuCAGGuaCGCGgCGCGGCc -3'
miRNA:   3'- -AGCUCCGCCG-------GUUCcgGCGC-GCGUCG- -5'
24004 5' -63 NC_005262.1 + 23370 0.71 0.176549
Target:  5'- gCGcGGCGGCgAAGGCCcgcaacgugaaGCGCcacaagGCGGCg -3'
miRNA:   3'- aGCuCCGCCGgUUCCGG-----------CGCG------CGUCG- -5'
24004 5' -63 NC_005262.1 + 61159 0.71 0.176549
Target:  5'- aUCGcGGCGGCgGGcGaGCUgacggGCGCGCGGCg -3'
miRNA:   3'- -AGCuCCGCCGgUU-C-CGG-----CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 23941 0.71 0.181117
Target:  5'- aCG-GGCGGCaccggcaAGGGCgGCGUGcCGGCc -3'
miRNA:   3'- aGCuCCGCCGg------UUCCGgCGCGC-GUCG- -5'
24004 5' -63 NC_005262.1 + 33432 0.71 0.181117
Target:  5'- gUCGAucGGCGGCaCGGuGCCGCGCagcgacGCAGUu -3'
miRNA:   3'- -AGCU--CCGCCG-GUUcCGGCGCG------CGUCG- -5'
24004 5' -63 NC_005262.1 + 17160 0.7 0.185789
Target:  5'- gUCGAcgGGCGcGCCuaucGGcGCCGUGCGC-GCg -3'
miRNA:   3'- -AGCU--CCGC-CGGu---UC-CGGCGCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 11568 0.7 0.185789
Target:  5'- gCGAcGCGGCCcauGuGCuCGCGCGCgAGCg -3'
miRNA:   3'- aGCUcCGCCGGuu-C-CG-GCGCGCG-UCG- -5'
24004 5' -63 NC_005262.1 + 28258 0.7 0.185789
Target:  5'- gUCGA--CGGCC---GCCGCGCGCAGUu -3'
miRNA:   3'- -AGCUccGCCGGuucCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 45058 0.7 0.185789
Target:  5'- gCGA-GCGGCCGauuccaGGGCaucacgCGCGCGCAGg -3'
miRNA:   3'- aGCUcCGCCGGU------UCCG------GCGCGCGUCg -5'
24004 5' -63 NC_005262.1 + 48120 0.7 0.185789
Target:  5'- gCGGGcGCGGCC--GGCUGCuGCGUGGUc -3'
miRNA:   3'- aGCUC-CGCCGGuuCCGGCG-CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 17033 0.7 0.187687
Target:  5'- cCGAGGCGGaaAAGcagcuccgcgagcucGUCGCGCGCAcgGCg -3'
miRNA:   3'- aGCUCCGCCggUUC---------------CGGCGCGCGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.