miRNA display CGI


Results 21 - 40 of 175 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 50172 0.66 0.364339
Target:  5'- gCGGcGCGGgUucGGUCG-GCGCAGCg -3'
miRNA:   3'- aGCUcCGCCgGuuCCGGCgCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 59518 0.66 0.364339
Target:  5'- aUGAGGCcguaGGCCAgcuucAGGUCGaGCGUuGCg -3'
miRNA:   3'- aGCUCCG----CCGGU-----UCCGGCgCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 18488 0.66 0.363527
Target:  5'- aUUGAGGCGcucggaaGCCGgugcGGGUCGUGCaaCGGCa -3'
miRNA:   3'- -AGCUCCGC-------CGGU----UCCGGCGCGc-GUCG- -5'
24004 5' -63 NC_005262.1 + 11051 0.66 0.357072
Target:  5'- ---cGGCGcGCCGAacagcgcgaaugccuGCUGCGCGUAGCg -3'
miRNA:   3'- agcuCCGC-CGGUUc--------------CGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 32450 0.66 0.356271
Target:  5'- aUCGAagcGGaGGCCGuuGGCCGUGcCGUAGg -3'
miRNA:   3'- -AGCU---CCgCCGGUu-CCGGCGC-GCGUCg -5'
24004 5' -63 NC_005262.1 + 61475 0.66 0.356271
Target:  5'- gCGAGGUcGUagUAGcGGCUGCGCaGCGGCu -3'
miRNA:   3'- aGCUCCGcCG--GUU-CCGGCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 45383 0.66 0.356271
Target:  5'- cUCG-GGUaGCaucuGGGCgGCGCaGCAGCa -3'
miRNA:   3'- -AGCuCCGcCGgu--UCCGgCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 12314 0.66 0.356271
Target:  5'- uUCGAcGGCaugcGGCUcguGCCgcaGCGCGCGGCg -3'
miRNA:   3'- -AGCU-CCG----CCGGuucCGG---CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 56784 0.66 0.356271
Target:  5'- aUGAagcuGGcCGGCCugAAGGCCGaCGUcgaGCGGCu -3'
miRNA:   3'- aGCU----CC-GCCGG--UUCCGGC-GCG---CGUCG- -5'
24004 5' -63 NC_005262.1 + 50406 0.66 0.34833
Target:  5'- gCGcGGCGGgCGcugcGGCCGgcuccucaaucCGCGCGGCc -3'
miRNA:   3'- aGCuCCGCCgGUu---CCGGC-----------GCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 4418 0.66 0.34833
Target:  5'- cCGAuGGaCGGCCcgcGAGGCuCGC-CGUAGUc -3'
miRNA:   3'- aGCU-CC-GCCGG---UUCCG-GCGcGCGUCG- -5'
24004 5' -63 NC_005262.1 + 4678 0.66 0.34833
Target:  5'- aUGccGCGGCCGgaucGGGCCGCG-GCAu- -3'
miRNA:   3'- aGCucCGCCGGU----UCCGGCGCgCGUcg -5'
24004 5' -63 NC_005262.1 + 61 0.66 0.338196
Target:  5'- cCGGGGaGGCCGcgGcucgcgaagaagucGGCCGCGcCGCAcGCu -3'
miRNA:   3'- aGCUCCgCCGGU--U--------------CCGGCGC-GCGU-CG- -5'
24004 5' -63 NC_005262.1 + 22327 0.67 0.332829
Target:  5'- gCGcAGGcCGGCCGgcguGGGCgGCGCGgCcgugAGCu -3'
miRNA:   3'- aGC-UCC-GCCGGU----UCCGgCGCGC-G----UCG- -5'
24004 5' -63 NC_005262.1 + 56912 0.67 0.332829
Target:  5'- cUCGccGGCGaGaUCAAGGCCGCGCucgagaAGCg -3'
miRNA:   3'- -AGCu-CCGC-C-GGUUCCGGCGCGcg----UCG- -5'
24004 5' -63 NC_005262.1 + 1906 0.67 0.332829
Target:  5'- uUCGAGcGgGGCgGAGGgUGCGgGUuGCg -3'
miRNA:   3'- -AGCUC-CgCCGgUUCCgGCGCgCGuCG- -5'
24004 5' -63 NC_005262.1 + 46690 0.67 0.332829
Target:  5'- cCGAuGCaGUCAGcGCCGCGCGC-GCa -3'
miRNA:   3'- aGCUcCGcCGGUUcCGGCGCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 46474 0.67 0.330548
Target:  5'- aCGAGGCGcGCCuguucGGCCuugauugcguccucGCGUucagccuucGCAGCg -3'
miRNA:   3'- aGCUCCGC-CGGuu---CCGG--------------CGCG---------CGUCG- -5'
24004 5' -63 NC_005262.1 + 40333 0.67 0.330548
Target:  5'- uUCGAGcauCGGCuCAcGGCCGgCGCGCugaugucgaucgucGGCg -3'
miRNA:   3'- -AGCUCc--GCCG-GUuCCGGC-GCGCG--------------UCG- -5'
24004 5' -63 NC_005262.1 + 16383 0.67 0.32527
Target:  5'- gUCGAucGGUugcacGCCGcGaGCgGCGCGCAGCa -3'
miRNA:   3'- -AGCU--CCGc----CGGUuC-CGgCGCGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.