Results 41 - 60 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24004 | 5' | -63 | NC_005262.1 | + | 31712 | 0.67 | 0.32527 |
Target: 5'- cCGuAGGuCGGCUu--GCCGCGCaGguGCa -3' miRNA: 3'- aGC-UCC-GCCGGuucCGGCGCG-CguCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 49898 | 0.67 | 0.32527 |
Target: 5'- aUCGc-GCGGCCGaucGGGCCG-GaCGguGCa -3' miRNA: 3'- -AGCucCGCCGGU---UCCGGCgC-GCguCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 17081 | 0.67 | 0.32527 |
Target: 5'- aCGAGcGCGcGCUc-GGCCgGCG-GCAGCa -3' miRNA: 3'- aGCUC-CGC-CGGuuCCGG-CGCgCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 22657 | 0.67 | 0.324521 |
Target: 5'- -aGAGGCGGaauggcuUCAGGGCgcggaccaGUGCGCAGa -3' miRNA: 3'- agCUCCGCC-------GGUUCCGg-------CGCGCGUCg -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 12998 | 0.67 | 0.323027 |
Target: 5'- gCGcAGGUugucguguccagcaGGCCGGGGCUGaUGCGCAcgaGCg -3' miRNA: 3'- aGC-UCCG--------------CCGGUUCCGGC-GCGCGU---CG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 29853 | 0.67 | 0.31784 |
Target: 5'- aCGAagauuuGGcCGGCCugaccgacGAGGa-GCGCGCGGCg -3' miRNA: 3'- aGCU------CC-GCCGG--------UUCCggCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 41281 | 0.67 | 0.31784 |
Target: 5'- cUCGAaGCGGUCGccGGGCgcgcaCGCGauCGCGGCg -3' miRNA: 3'- -AGCUcCGCCGGU--UCCG-----GCGC--GCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 36723 | 0.67 | 0.310538 |
Target: 5'- gUUGuGGgGGCUGGcGCCGCggGCGCAGUu -3' miRNA: 3'- -AGCuCCgCCGGUUcCGGCG--CGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 47829 | 0.67 | 0.310538 |
Target: 5'- uUCGccGCGGCC--GGCgGCGCaccagauacagGCGGCg -3' miRNA: 3'- -AGCucCGCCGGuuCCGgCGCG-----------CGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 49817 | 0.67 | 0.310538 |
Target: 5'- gUCGGuGCGGCUucGGCCGCcgguucgccGCcCGGCa -3' miRNA: 3'- -AGCUcCGCCGGuuCCGGCG---------CGcGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 1505 | 0.67 | 0.303364 |
Target: 5'- aCGAaGCGGCCGcGGUCGUG-GCGGa -3' miRNA: 3'- aGCUcCGCCGGUuCCGGCGCgCGUCg -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 25548 | 0.67 | 0.303364 |
Target: 5'- gCGA-GCGGCauc-GCCuCGCGCAGCg -3' miRNA: 3'- aGCUcCGCCGguucCGGcGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 48476 | 0.67 | 0.303364 |
Target: 5'- gCGAGccgcGUGGgCAcGGGCgGCGCGaCGGCa -3' miRNA: 3'- aGCUC----CGCCgGU-UCCGgCGCGC-GUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 11858 | 0.67 | 0.296319 |
Target: 5'- -gGAGcGCGcCCAggucGGGCCGCGC-CAGUu -3' miRNA: 3'- agCUC-CGCcGGU----UCCGGCGCGcGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 38408 | 0.67 | 0.296319 |
Target: 5'- cCGAuGGCGacaCCAuccAGGCCG-GCGCGGUc -3' miRNA: 3'- aGCU-CCGCc--GGU---UCCGGCgCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 10701 | 0.67 | 0.296319 |
Target: 5'- ----cGCaGaUCGAGGCCGCGCGCAcGCg -3' miRNA: 3'- agcucCGcC-GGUUCCGGCGCGCGU-CG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 49648 | 0.67 | 0.295622 |
Target: 5'- gCGAucGGCGGCCugcAAGGCgGCgGCauggggauggucgGCGGCg -3' miRNA: 3'- aGCU--CCGCCGG---UUCCGgCG-CG-------------CGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 63670 | 0.67 | 0.29423 |
Target: 5'- -gGGGGCGGCgGAGccagacacgcuaccGCCG-GCgGCGGCg -3' miRNA: 3'- agCUCCGCCGgUUC--------------CGGCgCG-CGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 16980 | 0.68 | 0.289401 |
Target: 5'- gCG-GGCGGUgCGGuguggugcGGCCcgGCGCGCGGCc -3' miRNA: 3'- aGCuCCGCCG-GUU--------CCGG--CGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 33574 | 0.68 | 0.289401 |
Target: 5'- cUCGAGGcCGGCgagaucacgauCGAGGCCaC-CGCAGUc -3' miRNA: 3'- -AGCUCC-GCCG-----------GUUCCGGcGcGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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