miRNA display CGI


Results 61 - 80 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 16980 0.68 0.289401
Target:  5'- gCG-GGCGGUgCGGuguggugcGGCCcgGCGCGCGGCc -3'
miRNA:   3'- aGCuCCGCCG-GUU--------CCGG--CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 18613 0.68 0.289401
Target:  5'- gUCGGGGCuauaGCUucgAGGuGCUGCGCGCucGGCu -3'
miRNA:   3'- -AGCUCCGc---CGG---UUC-CGGCGCGCG--UCG- -5'
24004 5' -63 NC_005262.1 + 49778 0.68 0.289401
Target:  5'- cCGucGCGGUUcAGGuuGCGCGCGccGCc -3'
miRNA:   3'- aGCucCGCCGGuUCCggCGCGCGU--CG- -5'
24004 5' -63 NC_005262.1 + 10802 0.68 0.282611
Target:  5'- gCGGGaGC-GCC--GGCCGCGUGCGcGCg -3'
miRNA:   3'- aGCUC-CGcCGGuuCCGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 49147 0.68 0.282611
Target:  5'- gUCGGcacGGUGGgCGugcAGGCCGCaucggcCGCAGCg -3'
miRNA:   3'- -AGCU---CCGCCgGU---UCCGGCGc-----GCGUCG- -5'
24004 5' -63 NC_005262.1 + 51469 0.68 0.281939
Target:  5'- gUCaGGcGCGGCCuuGGCCggcgucgcggacgGCGCGguGCc -3'
miRNA:   3'- -AGcUC-CGCCGGuuCCGG-------------CGCGCguCG- -5'
24004 5' -63 NC_005262.1 + 60489 0.68 0.275948
Target:  5'- aUCaGGGCGagacGCC-GGGCCGCGCGgcgcaGGCc -3'
miRNA:   3'- -AGcUCCGC----CGGuUCCGGCGCGCg----UCG- -5'
24004 5' -63 NC_005262.1 + 61288 0.68 0.275948
Target:  5'- aUCGGcGCGGCCAgccucgcgGGGUCGgauaUGgGCAGCa -3'
miRNA:   3'- -AGCUcCGCCGGU--------UCCGGC----GCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 58547 0.68 0.26941
Target:  5'- aCGAGGCGuuccaCCAAGGCgGCGagaAGCu -3'
miRNA:   3'- aGCUCCGCc----GGUUCCGgCGCgcgUCG- -5'
24004 5' -63 NC_005262.1 + 42237 0.68 0.26941
Target:  5'- cUCGcGGUuccgauGCCGAGcGCCGCGCucacuGCGGCg -3'
miRNA:   3'- -AGCuCCGc-----CGGUUC-CGGCGCG-----CGUCG- -5'
24004 5' -63 NC_005262.1 + 5350 0.68 0.26941
Target:  5'- aCGAGGCauccGGCUucGAGGCauucaaucaGCGCGGCg -3'
miRNA:   3'- aGCUCCG----CCGG--UUCCGgcg------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 11667 0.68 0.26941
Target:  5'- cUCGAGcGCuGGCCGccGCCG-GCauaGCAGCg -3'
miRNA:   3'- -AGCUC-CG-CCGGUucCGGCgCG---CGUCG- -5'
24004 5' -63 NC_005262.1 + 51940 0.68 0.26941
Target:  5'- aCGAcGGacaaGGUgGAGGCCGCucGCGCGcGCc -3'
miRNA:   3'- aGCU-CCg---CCGgUUCCGGCG--CGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 3644 0.68 0.26941
Target:  5'- -aGAGcaaGCGcGUCAAGGCCGCGauacgccgGCAGUg -3'
miRNA:   3'- agCUC---CGC-CGGUUCCGGCGCg-------CGUCG- -5'
24004 5' -63 NC_005262.1 + 21721 0.68 0.268764
Target:  5'- aUCGgcaAGGaCGGCCucAAGGCgcucacggaagauCGCGCaGCGGCa -3'
miRNA:   3'- -AGC---UCC-GCCGG--UUCCG-------------GCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 45701 0.68 0.262999
Target:  5'- aUCGAGGgcCGGCagccGGCCGUGaucgaGCAGUu -3'
miRNA:   3'- -AGCUCC--GCCGguu-CCGGCGCg----CGUCG- -5'
24004 5' -63 NC_005262.1 + 5055 0.68 0.262999
Target:  5'- cUGAucGGCGGgCAGGcCCGCG-GCGGCg -3'
miRNA:   3'- aGCU--CCGCCgGUUCcGGCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 54579 0.68 0.262999
Target:  5'- gUCGGGcccaGCGGCUucGGCUGCaccGCgaGCAGCg -3'
miRNA:   3'- -AGCUC----CGCCGGuuCCGGCG---CG--CGUCG- -5'
24004 5' -63 NC_005262.1 + 60371 0.68 0.262364
Target:  5'- cUGaAGGCGGCgAAGGUCGCcgGCcgcaagaucgucgGCGGCa -3'
miRNA:   3'- aGC-UCCGCCGgUUCCGGCG--CG-------------CGUCG- -5'
24004 5' -63 NC_005262.1 + 37724 0.68 0.256712
Target:  5'- aUGGGGCGugaAGGGCUGCGCGUcgaaggGGCa -3'
miRNA:   3'- aGCUCCGCcggUUCCGGCGCGCG------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.