miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 61 0.66 0.338196
Target:  5'- cCGGGGaGGCCGcgGcucgcgaagaagucGGCCGCGcCGCAcGCu -3'
miRNA:   3'- aGCUCCgCCGGU--U--------------CCGGCGC-GCGU-CG- -5'
24004 5' -63 NC_005262.1 + 1246 0.66 0.372533
Target:  5'- gCGcAGGauGgCAAGcCCGCGCgGCAGCa -3'
miRNA:   3'- aGC-UCCgcCgGUUCcGGCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 1505 0.67 0.303364
Target:  5'- aCGAaGCGGCCGcGGUCGUG-GCGGa -3'
miRNA:   3'- aGCUcCGCCGGUuCCGGCGCgCGUCg -5'
24004 5' -63 NC_005262.1 + 1906 0.67 0.332829
Target:  5'- uUCGAGcGgGGCgGAGGgUGCGgGUuGCg -3'
miRNA:   3'- -AGCUC-CgCCGgUUCCgGCGCgCGuCG- -5'
24004 5' -63 NC_005262.1 + 2667 0.71 0.159291
Target:  5'- cCG-GGCGGCguccuGGCCGC-CGUAGCa -3'
miRNA:   3'- aGCuCCGCCGguu--CCGGCGcGCGUCG- -5'
24004 5' -63 NC_005262.1 + 2770 0.73 0.127251
Target:  5'- cUCGAgcgugagcuugcuacGGCGGCCAGGacGCCGCccgGCGCcGCg -3'
miRNA:   3'- -AGCU---------------CCGCCGGUUC--CGGCG---CGCGuCG- -5'
24004 5' -63 NC_005262.1 + 3629 0.7 0.190566
Target:  5'- aCGAGGU--CCAucGGCUggGCGCGCAGCu -3'
miRNA:   3'- aGCUCCGccGGUu-CCGG--CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 3644 0.68 0.26941
Target:  5'- -aGAGcaaGCGcGUCAAGGCCGCGauacgccgGCAGUg -3'
miRNA:   3'- agCUC---CGC-CGGUUCCGGCGCg-------CGUCG- -5'
24004 5' -63 NC_005262.1 + 4418 0.66 0.34833
Target:  5'- cCGAuGGaCGGCCcgcGAGGCuCGC-CGUAGUc -3'
miRNA:   3'- aGCU-CC-GCCGG---UUCCG-GCGcGCGUCG- -5'
24004 5' -63 NC_005262.1 + 4531 0.66 0.389292
Target:  5'- -gGGGGuuGUacaGGGGCuucaucgugCGCGCGCGGCg -3'
miRNA:   3'- agCUCCgcCGg--UUCCG---------GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 4678 0.66 0.34833
Target:  5'- aUGccGCGGCCGgaucGGGCCGCG-GCAu- -3'
miRNA:   3'- aGCucCGCCGGU----UCCGGCGCgCGUcg -5'
24004 5' -63 NC_005262.1 + 5055 0.68 0.262999
Target:  5'- cUGAucGGCGGgCAGGcCCGCG-GCGGCg -3'
miRNA:   3'- aGCU--CCGCCgGUUCcGGCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 5169 0.69 0.220995
Target:  5'- aUCGGuGaCGGCCGgcgucgcGGGCgCGgGCGCGGCc -3'
miRNA:   3'- -AGCUcC-GCCGGU-------UCCG-GCgCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 5307 0.72 0.139866
Target:  5'- gUCGAGGCGGUCGGagcuGGCCG-GCaGgAGCu -3'
miRNA:   3'- -AGCUCCGCCGGUU----CCGGCgCG-CgUCG- -5'
24004 5' -63 NC_005262.1 + 5350 0.68 0.26941
Target:  5'- aCGAGGCauccGGCUucGAGGCauucaaucaGCGCGGCg -3'
miRNA:   3'- aGCUCCG----CCGG--UUCCGgcg------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 5766 0.71 0.159291
Target:  5'- cUCGcGGCcauccggaaacaGGCCAucuuGcGCCGCGCGCAuGCa -3'
miRNA:   3'- -AGCuCCG------------CCGGUu---C-CGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 6339 0.81 0.033182
Target:  5'- aUCGAGGCGGCaAAGaCCguGCGCGCGGCg -3'
miRNA:   3'- -AGCUCCGCCGgUUCcGG--CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 6391 0.72 0.15522
Target:  5'- -aGAGGCGGCC--GGCgaGCGCaagaagGCGGCg -3'
miRNA:   3'- agCUCCGCCGGuuCCGg-CGCG------CGUCG- -5'
24004 5' -63 NC_005262.1 + 7014 0.69 0.252998
Target:  5'- gCGcGGCGGCUucGGUggacgucagguccuuCGCGCGCAucGCg -3'
miRNA:   3'- aGCuCCGCCGGuuCCG---------------GCGCGCGU--CG- -5'
24004 5' -63 NC_005262.1 + 7643 0.66 0.389292
Target:  5'- gUCGAcgccGGCGGCgAcGGCuaucucCGCGaGCGGCa -3'
miRNA:   3'- -AGCU----CCGCCGgUuCCG------GCGCgCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.