miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 8012 0.71 0.163457
Target:  5'- -gGAGGCGGCaAAGGCCcuccggcucGCGUcaggacugacGCAGCg -3'
miRNA:   3'- agCUCCGCCGgUUCCGG---------CGCG----------CGUCG- -5'
24004 5' -63 NC_005262.1 + 8090 0.66 0.372533
Target:  5'- aUCGGGGCacuGGuUCGAGGUCGggaaGCGCAagaGCa -3'
miRNA:   3'- -AGCUCCG---CC-GGUUCCGGCg---CGCGU---CG- -5'
24004 5' -63 NC_005262.1 + 8299 0.73 0.132722
Target:  5'- gCGAGGCGGCCAagaAGGUgaagaaGauCGCAGCg -3'
miRNA:   3'- aGCUCCGCCGGU---UCCGg-----CgcGCGUCG- -5'
24004 5' -63 NC_005262.1 + 10528 0.82 0.027774
Target:  5'- -gGGGGCGGCCGaaacggcuaugccgAcgcgaccGGCCGCGCGCAGCc -3'
miRNA:   3'- agCUCCGCCGGU--------------U-------CCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 10651 0.7 0.210768
Target:  5'- cCGcGGUacGCUgcGGCUGCGCGCGGCc -3'
miRNA:   3'- aGCuCCGc-CGGuuCCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 10701 0.67 0.296319
Target:  5'- ----cGCaGaUCGAGGCCGCGCGCAcGCg -3'
miRNA:   3'- agcucCGcC-GGUUCCGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 10802 0.68 0.282611
Target:  5'- gCGGGaGC-GCC--GGCCGCGUGCGcGCg -3'
miRNA:   3'- aGCUC-CGcCGGuuCCGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 11020 0.86 0.013927
Target:  5'- gCGAGGCGGCugucgcgCAAGaCCGCGCGCAGCa -3'
miRNA:   3'- aGCUCCGCCG-------GUUCcGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 11051 0.66 0.357072
Target:  5'- ---cGGCGcGCCGAacagcgcgaaugccuGCUGCGCGUAGCg -3'
miRNA:   3'- agcuCCGC-CGGUUc--------------CGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 11077 0.69 0.238587
Target:  5'- cCGA-GCGGCCAaaGGGCgGCcCGCuGGCa -3'
miRNA:   3'- aGCUcCGCCGGU--UCCGgCGcGCG-UCG- -5'
24004 5' -63 NC_005262.1 + 11130 0.72 0.139866
Target:  5'- aCGcuGCGGCCuguuGCUGCGCGCGGUc -3'
miRNA:   3'- aGCucCGCCGGuuc-CGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 11497 0.69 0.232788
Target:  5'- ---cGGCGGCCc-GGCgCG-GCGCGGCu -3'
miRNA:   3'- agcuCCGCCGGuuCCG-GCgCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 11568 0.7 0.185789
Target:  5'- gCGAcGCGGCCcauGuGCuCGCGCGCgAGCg -3'
miRNA:   3'- aGCUcCGCCGGuu-C-CG-GCGCGCG-UCG- -5'
24004 5' -63 NC_005262.1 + 11640 0.66 0.372533
Target:  5'- aUCGGcucGGCGGCgCcGGcGUCGCGCuGCAcGCu -3'
miRNA:   3'- -AGCU---CCGCCG-GuUC-CGGCGCG-CGU-CG- -5'
24004 5' -63 NC_005262.1 + 11667 0.68 0.26941
Target:  5'- cUCGAGcGCuGGCCGccGCCG-GCauaGCAGCg -3'
miRNA:   3'- -AGCUC-CG-CCGGUucCGGCgCG---CGUCG- -5'
24004 5' -63 NC_005262.1 + 11858 0.67 0.296319
Target:  5'- -gGAGcGCGcCCAggucGGGCCGCGC-CAGUu -3'
miRNA:   3'- agCUC-CGCcGGU----UCCGGCGCGcGUCG- -5'
24004 5' -63 NC_005262.1 + 12127 0.66 0.380851
Target:  5'- gUGAGGUcugccauGCCGGGGaCGCGCGCGa- -3'
miRNA:   3'- aGCUCCGc------CGGUUCCgGCGCGCGUcg -5'
24004 5' -63 NC_005262.1 + 12314 0.66 0.356271
Target:  5'- uUCGAcGGCaugcGGCUcguGCCgcaGCGCGCGGCg -3'
miRNA:   3'- -AGCU-CCG----CCGGuucCGG---CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 12547 0.7 0.190566
Target:  5'- gUUGcGGCGGC--AGGUCGCG-GCGGCg -3'
miRNA:   3'- -AGCuCCGCCGguUCCGGCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 12752 0.66 0.380851
Target:  5'- aCG-GGCGcaggguucGCCGcGcGCCGCGCGC-GCu -3'
miRNA:   3'- aGCuCCGC--------CGGUuC-CGGCGCGCGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.