miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 12791 0.66 0.389292
Target:  5'- aCGcccGUGaGCauuGGGCgGCGCGCAGCc -3'
miRNA:   3'- aGCuc-CGC-CGgu-UCCGgCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 12933 0.69 0.250548
Target:  5'- gCGcGGCGcGCUgaAGGGCgUGCGCGaCGGCa -3'
miRNA:   3'- aGCuCCGC-CGG--UUCCG-GCGCGC-GUCG- -5'
24004 5' -63 NC_005262.1 + 12998 0.67 0.323027
Target:  5'- gCGcAGGUugucguguccagcaGGCCGGGGCUGaUGCGCAcgaGCg -3'
miRNA:   3'- aGC-UCCG--------------CCGGUUCCGGC-GCGCGU---CG- -5'
24004 5' -63 NC_005262.1 + 15587 0.72 0.147361
Target:  5'- -gGAGGCGcgcgcGCgCGAGGagCGCGUGCGGCa -3'
miRNA:   3'- agCUCCGC-----CG-GUUCCg-GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 16383 0.67 0.32527
Target:  5'- gUCGAucGGUugcacGCCGcGaGCgGCGCGCAGCa -3'
miRNA:   3'- -AGCU--CCGc----CGGUuC-CGgCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 16502 0.69 0.250548
Target:  5'- gCGAGGC-GCUggGcGCUGCGCuGgGGCu -3'
miRNA:   3'- aGCUCCGcCGGuuC-CGGCGCG-CgUCG- -5'
24004 5' -63 NC_005262.1 + 16600 0.75 0.084348
Target:  5'- gUCGAGGCGGCgAAGcaGCCGCGUuucgaGCugGGCg -3'
miRNA:   3'- -AGCUCCGCCGgUUC--CGGCGCG-----CG--UCG- -5'
24004 5' -63 NC_005262.1 + 16869 0.69 0.227108
Target:  5'- aUGcAGGC-GCCc-GGCCGCGCGCcgGGCc -3'
miRNA:   3'- aGC-UCCGcCGGuuCCGGCGCGCG--UCG- -5'
24004 5' -63 NC_005262.1 + 16980 0.68 0.289401
Target:  5'- gCG-GGCGGUgCGGuguggugcGGCCcgGCGCGCGGCc -3'
miRNA:   3'- aGCuCCGCCG-GUU--------CCGG--CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 17033 0.7 0.187687
Target:  5'- cCGAGGCGGaaAAGcagcuccgcgagcucGUCGCGCGCAcgGCg -3'
miRNA:   3'- aGCUCCGCCggUUC---------------CGGCGCGCGU--CG- -5'
24004 5' -63 NC_005262.1 + 17081 0.67 0.32527
Target:  5'- aCGAGcGCGcGCUc-GGCCgGCG-GCAGCa -3'
miRNA:   3'- aGCUC-CGC-CGGuuCCGG-CGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 17092 0.73 0.116003
Target:  5'- gUCGAcGCGGC--GGGCCGCgaggagguccaccGCGCGGCg -3'
miRNA:   3'- -AGCUcCGCCGguUCCGGCG-------------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 17158 0.79 0.046248
Target:  5'- aUCGAGaaGGCCGgcaAGGCCGCGCGCGaggacGCg -3'
miRNA:   3'- -AGCUCcgCCGGU---UCCGGCGCGCGU-----CG- -5'
24004 5' -63 NC_005262.1 + 17160 0.7 0.185789
Target:  5'- gUCGAcgGGCGcGCCuaucGGcGCCGUGCGC-GCg -3'
miRNA:   3'- -AGCU--CCGC-CGGu---UC-CGGCGCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 17555 0.77 0.062553
Target:  5'- gCGAGGCGGCa---GCCGCG-GCGGCg -3'
miRNA:   3'- aGCUCCGCCGguucCGGCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 17594 0.72 0.136251
Target:  5'- gUCGucAGGCuGCCGAucgacGcGUCGCGCGCGGCg -3'
miRNA:   3'- -AGC--UCCGcCGGUU-----C-CGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 18488 0.66 0.363527
Target:  5'- aUUGAGGCGcucggaaGCCGgugcGGGUCGUGCaaCGGCa -3'
miRNA:   3'- -AGCUCCGC-------CGGU----UCCGGCGCGc-GUCG- -5'
24004 5' -63 NC_005262.1 + 18613 0.68 0.289401
Target:  5'- gUCGGGGCuauaGCUucgAGGuGCUGCGCGCucGGCu -3'
miRNA:   3'- -AGCUCCGc---CGG---UUC-CGGCGCGCG--UCG- -5'
24004 5' -63 NC_005262.1 + 20594 0.71 0.163457
Target:  5'- gCGcGGCGcGCCGcaGGGCUGuUGCGUAGCc -3'
miRNA:   3'- aGCuCCGC-CGGU--UCCGGC-GCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 21349 1.11 0.000141
Target:  5'- aUCGAGGCGGCCAAGGCCGCGCGCAGCg -3'
miRNA:   3'- -AGCUCCGCCGGUUCCGGCGCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.