miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 63670 0.67 0.29423
Target:  5'- -gGGGGCGGCgGAGccagacacgcuaccGCCG-GCgGCGGCg -3'
miRNA:   3'- agCUCCGCCGgUUC--------------CGGCgCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 62134 0.73 0.119434
Target:  5'- -gGAGGCGaugcGCCGcaucgaggaggAGGaUCGCGCGCGGCg -3'
miRNA:   3'- agCUCCGC----CGGU-----------UCC-GGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 61475 0.66 0.356271
Target:  5'- gCGAGGUcGUagUAGcGGCUGCGCaGCGGCu -3'
miRNA:   3'- aGCUCCGcCG--GUU-CCGGCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 61420 0.69 0.221545
Target:  5'- gCGAaggcGGCGGCCGAGGaauuccacgUCGCGaagaagGCGGCg -3'
miRNA:   3'- aGCU----CCGCCGGUUCC---------GGCGCg-----CGUCG- -5'
24004 5' -63 NC_005262.1 + 61288 0.68 0.275948
Target:  5'- aUCGGcGCGGCCAgccucgcgGGGUCGgauaUGgGCAGCa -3'
miRNA:   3'- -AGCUcCGCCGGU--------UCCGGC----GCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 61159 0.71 0.176549
Target:  5'- aUCGcGGCGGCgGGcGaGCUgacggGCGCGCGGCg -3'
miRNA:   3'- -AGCuCCGCCGgUU-C-CGG-----CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 60852 0.74 0.096499
Target:  5'- gCGuGGCgauGGCCGAGGCaauGCGCGCgaaAGCg -3'
miRNA:   3'- aGCuCCG---CCGGUUCCGg--CGCGCG---UCG- -5'
24004 5' -63 NC_005262.1 + 60607 0.73 0.128938
Target:  5'- gUCGAccgucacgcucuuGGCGGCCugcGCCGCGCGgccCGGCg -3'
miRNA:   3'- -AGCU-------------CCGCCGGuucCGGCGCGC---GUCG- -5'
24004 5' -63 NC_005262.1 + 60489 0.68 0.275948
Target:  5'- aUCaGGGCGagacGCC-GGGCCGCGCGgcgcaGGCc -3'
miRNA:   3'- -AGcUCCGC----CGGuUCCGGCGCGCg----UCG- -5'
24004 5' -63 NC_005262.1 + 60371 0.68 0.262364
Target:  5'- cUGaAGGCGGCgAAGGUCGCcgGCcgcaagaucgucgGCGGCa -3'
miRNA:   3'- aGC-UCCGCCGgUUCCGGCG--CG-------------CGUCG- -5'
24004 5' -63 NC_005262.1 + 60324 0.69 0.238587
Target:  5'- aCGAGGaC-GCCuacGG-CGCGCGCGGCu -3'
miRNA:   3'- aGCUCC-GcCGGuu-CCgGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 59518 0.66 0.364339
Target:  5'- aUGAGGCcguaGGCCAgcuucAGGUCGaGCGUuGCg -3'
miRNA:   3'- aGCUCCG----CCGGU-----UCCGGCgCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 59218 0.66 0.389292
Target:  5'- gCGAcGCGGCCc-GGCCGguucgccucgGCGCGGUa -3'
miRNA:   3'- aGCUcCGCCGGuuCCGGCg---------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 59128 0.77 0.060866
Target:  5'- cCGAGGCgaaccGGCC-GGGCCGCGuCGCcGCg -3'
miRNA:   3'- aGCUCCG-----CCGGuUCCGGCGC-GCGuCG- -5'
24004 5' -63 NC_005262.1 + 59013 0.72 0.136251
Target:  5'- cCGAGaagcGCGcGCCAucggucGGGCCGCcggccugaucGCGCAGCg -3'
miRNA:   3'- aGCUC----CGC-CGGU------UCCGGCG----------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 58930 0.69 0.232788
Target:  5'- cCGAuGGCGcGCgCuucucGGUCgGCGCGCAGCa -3'
miRNA:   3'- aGCU-CCGC-CG-Guu---CCGG-CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 58547 0.68 0.26941
Target:  5'- aCGAGGCGuuccaCCAAGGCgGCGagaAGCu -3'
miRNA:   3'- aGCUCCGCc----GGUUCCGgCGCgcgUCG- -5'
24004 5' -63 NC_005262.1 + 57790 0.72 0.137327
Target:  5'- gUCGuGGCGGCCuaccgaaagcaccuuGCCGCGCcCGGCg -3'
miRNA:   3'- -AGCuCCGCCGGuuc------------CGGCGCGcGUCG- -5'
24004 5' -63 NC_005262.1 + 57658 0.72 0.136251
Target:  5'- cUCGAucGGCGGCaCGAucgacuucucgcGcGCCGgGCGCGGCa -3'
miRNA:   3'- -AGCU--CCGCCG-GUU------------C-CGGCgCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 57417 0.66 0.370062
Target:  5'- cCGAgaaGGCGGCCGacaacgcuccGGcaccguccgcggauGCCGCG-GCGGCg -3'
miRNA:   3'- aGCU---CCGCCGGU----------UC--------------CGGCGCgCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.