miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 57275 0.66 0.380851
Target:  5'- cUCGc-GCaGCuCAcGGcCCGCGUGCAGCa -3'
miRNA:   3'- -AGCucCGcCG-GUuCC-GGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 56912 0.67 0.332829
Target:  5'- cUCGccGGCGaGaUCAAGGCCGCGCucgagaAGCg -3'
miRNA:   3'- -AGCu-CCGC-C-GGUUCCGGCGCGcg----UCG- -5'
24004 5' -63 NC_005262.1 + 56879 0.66 0.389292
Target:  5'- cUCGAcGuCGGCCuucAGGCCG-GC-CAGCu -3'
miRNA:   3'- -AGCUcC-GCCGGu--UCCGGCgCGcGUCG- -5'
24004 5' -63 NC_005262.1 + 56784 0.66 0.356271
Target:  5'- aUGAagcuGGcCGGCCugAAGGCCGaCGUcgaGCGGCu -3'
miRNA:   3'- aGCU----CC-GCCGG--UUCCGGC-GCG---CGUCG- -5'
24004 5' -63 NC_005262.1 + 56728 0.69 0.244507
Target:  5'- cCGAGGCgucGGCguucgaCAuGGCCGCcGCGCuGGCg -3'
miRNA:   3'- aGCUCCG---CCG------GUuCCGGCG-CGCG-UCG- -5'
24004 5' -63 NC_005262.1 + 55745 0.71 0.163457
Target:  5'- uUCGugaccGGCGuGCCGGacgcGGCCacgaGCGCGCGGCc -3'
miRNA:   3'- -AGCu----CCGC-CGGUU----CCGG----CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 54774 0.69 0.246908
Target:  5'- cCGAGGCGaCCGAGaaggccaacgacgucGCgcagaagaUGCGCGCGGCg -3'
miRNA:   3'- aGCUCCGCcGGUUC---------------CG--------GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 54579 0.68 0.262999
Target:  5'- gUCGGGcccaGCGGCUucGGCUGCaccGCgaGCAGCg -3'
miRNA:   3'- -AGCUC----CGCCGGuuCCGGCG---CG--CGUCG- -5'
24004 5' -63 NC_005262.1 + 54427 0.68 0.256712
Target:  5'- -gGAGGCgcaGGCC---GCCGCGCGC-GCc -3'
miRNA:   3'- agCUCCG---CCGGuucCGGCGCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 54209 0.68 0.289401
Target:  5'- gCGAGuaGGCgAGGgcGCCGUcgacgucgagGCGCAGCa -3'
miRNA:   3'- aGCUCcgCCGgUUC--CGGCG----------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 53788 0.73 0.122635
Target:  5'- uUCGAcGCGGCCGGGuuCUGCGCGCccGGCu -3'
miRNA:   3'- -AGCUcCGCCGGUUCc-GGCGCGCG--UCG- -5'
24004 5' -63 NC_005262.1 + 53428 0.66 0.372533
Target:  5'- uUCGc-GCGGUCGgcgAGGUagcggCGCGCGCGGUc -3'
miRNA:   3'- -AGCucCGCCGGU---UCCG-----GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 52832 0.7 0.195452
Target:  5'- gCGA-GCGGCUgAAGGCUGCGCucacgcaugaGCAGUa -3'
miRNA:   3'- aGCUcCGCCGG-UUCCGGCGCG----------CGUCG- -5'
24004 5' -63 NC_005262.1 + 52521 0.66 0.389292
Target:  5'- cCGAGaaguCGGCCGAGGagauCGCgcugGCGCAGg -3'
miRNA:   3'- aGCUCc---GCCGGUUCCg---GCG----CGCGUCg -5'
24004 5' -63 NC_005262.1 + 51940 0.68 0.26941
Target:  5'- aCGAcGGacaaGGUgGAGGCCGCucGCGCGcGCc -3'
miRNA:   3'- aGCU-CCg---CCGgUUCCGGCG--CGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 51469 0.68 0.281939
Target:  5'- gUCaGGcGCGGCCuuGGCCggcgucgcggacgGCGCGguGCc -3'
miRNA:   3'- -AGcUC-CGCCGGuuCCGG-------------CGCGCguCG- -5'
24004 5' -63 NC_005262.1 + 51380 0.73 0.113264
Target:  5'- gCGAcGcCGGCCAAGGCCGCGCcugaccguguGCAccGCg -3'
miRNA:   3'- aGCUcC-GCCGGUUCCGGCGCG----------CGU--CG- -5'
24004 5' -63 NC_005262.1 + 51256 0.66 0.372533
Target:  5'- gUCGucGGCuGCCu--GCUGCGCGCucGGCg -3'
miRNA:   3'- -AGCu-CCGcCGGuucCGGCGCGCG--UCG- -5'
24004 5' -63 NC_005262.1 + 51192 0.74 0.096499
Target:  5'- aCGcGGCGGCCcgcuGGaGCCGCGCG-GGCg -3'
miRNA:   3'- aGCuCCGCCGGu---UC-CGGCGCGCgUCG- -5'
24004 5' -63 NC_005262.1 + 50406 0.66 0.34833
Target:  5'- gCGcGGCGGgCGcugcGGCCGgcuccucaaucCGCGCGGCc -3'
miRNA:   3'- aGCuCCGCCgGUu---CCGGC-----------GCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.