Results 1 - 20 of 175 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24004 | 5' | -63 | NC_005262.1 | + | 2667 | 0.71 | 0.159291 |
Target: 5'- cCG-GGCGGCguccuGGCCGC-CGUAGCa -3' miRNA: 3'- aGCuCCGCCGguu--CCGGCGcGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 60852 | 0.74 | 0.096499 |
Target: 5'- gCGuGGCgauGGCCGAGGCaauGCGCGCgaaAGCg -3' miRNA: 3'- aGCuCCG---CCGGUUCCGg--CGCGCG---UCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 51380 | 0.73 | 0.113264 |
Target: 5'- gCGAcGcCGGCCAAGGCCGCGCcugaccguguGCAccGCg -3' miRNA: 3'- aGCUcC-GCCGGUUCCGGCGCG----------CGU--CG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 17092 | 0.73 | 0.116003 |
Target: 5'- gUCGAcGCGGC--GGGCCGCgaggagguccaccGCGCGGCg -3' miRNA: 3'- -AGCUcCGCCGguUCCGGCG-------------CGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 26531 | 0.73 | 0.125584 |
Target: 5'- cCGAcaagaccGGCGGCCAcuccgaagcGGCCGaCGCGCuGCg -3' miRNA: 3'- aGCU-------CCGCCGGUu--------CCGGC-GCGCGuCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 8299 | 0.73 | 0.132722 |
Target: 5'- gCGAGGCGGCCAagaAGGUgaagaaGauCGCAGCg -3' miRNA: 3'- aGCUCCGCCGGU---UCCGg-----CgcGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 57658 | 0.72 | 0.136251 |
Target: 5'- cUCGAucGGCGGCaCGAucgacuucucgcGcGCCGgGCGCGGCa -3' miRNA: 3'- -AGCU--CCGCCG-GUU------------C-CGGCgCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 5307 | 0.72 | 0.139866 |
Target: 5'- gUCGAGGCGGUCGGagcuGGCCG-GCaGgAGCu -3' miRNA: 3'- -AGCUCCGCCGGUU----CCGGCgCG-CgUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 15587 | 0.72 | 0.147361 |
Target: 5'- -gGAGGCGcgcgcGCgCGAGGagCGCGUGCGGCa -3' miRNA: 3'- agCUCCGC-----CG-GUUCCg-GCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 51192 | 0.74 | 0.096499 |
Target: 5'- aCGcGGCGGCCcgcuGGaGCCGCGCG-GGCg -3' miRNA: 3'- aGCuCCGCCGGu---UC-CGGCGCGCgUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 16600 | 0.75 | 0.084348 |
Target: 5'- gUCGAGGCGGCgAAGcaGCCGCGUuucgaGCugGGCg -3' miRNA: 3'- -AGCUCCGCCGgUUC--CGGCGCG-----CG--UCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 44972 | 0.76 | 0.079907 |
Target: 5'- cCGAGGCG---AGGGCCGaCGUGCAGCa -3' miRNA: 3'- aGCUCCGCcggUUCCGGC-GCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 11020 | 0.86 | 0.013927 |
Target: 5'- gCGAGGCGGCugucgcgCAAGaCCGCGCGCAGCa -3' miRNA: 3'- aGCUCCGCCG-------GUUCcGGCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 49217 | 0.85 | 0.016066 |
Target: 5'- cCGAgGGCGGCCucGGCgGCGCGCAGUc -3' miRNA: 3'- aGCU-CCGCCGGuuCCGgCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 10528 | 0.82 | 0.027774 |
Target: 5'- -gGGGGCGGCCGaaacggcuaugccgAcgcgaccGGCCGCGCGCAGCc -3' miRNA: 3'- agCUCCGCCGGU--------------U-------CCGGCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 43819 | 0.8 | 0.040284 |
Target: 5'- aUCGcGGCgacacGGCCGcgggccGGCCGCGCGCGGCg -3' miRNA: 3'- -AGCuCCG-----CCGGUu-----CCGGCGCGCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 17158 | 0.79 | 0.046248 |
Target: 5'- aUCGAGaaGGCCGgcaAGGCCGCGCGCGaggacGCg -3' miRNA: 3'- -AGCUCcgCCGGU---UCCGGCGCGCGU-----CG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 59128 | 0.77 | 0.060866 |
Target: 5'- cCGAGGCgaaccGGCC-GGGCCGCGuCGCcGCg -3' miRNA: 3'- aGCUCCG-----CCGGuUCCGGCGC-GCGuCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 17555 | 0.77 | 0.062553 |
Target: 5'- gCGAGGCGGCa---GCCGCG-GCGGCg -3' miRNA: 3'- aGCUCCGCCGguucCGGCGCgCGUCG- -5' |
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24004 | 5' | -63 | NC_005262.1 | + | 24202 | 0.76 | 0.073664 |
Target: 5'- cCGAGGCGGCa---GCCGCGaCGCuGCg -3' miRNA: 3'- aGCUCCGCCGguucCGGCGC-GCGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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