miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 17158 0.79 0.046248
Target:  5'- aUCGAGaaGGCCGgcaAGGCCGCGCGCGaggacGCg -3'
miRNA:   3'- -AGCUCcgCCGGU---UCCGGCGCGCGU-----CG- -5'
24004 5' -63 NC_005262.1 + 43819 0.8 0.040284
Target:  5'- aUCGcGGCgacacGGCCGcgggccGGCCGCGCGCGGCg -3'
miRNA:   3'- -AGCuCCG-----CCGGUu-----CCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 10528 0.82 0.027774
Target:  5'- -gGGGGCGGCCGaaacggcuaugccgAcgcgaccGGCCGCGCGCAGCc -3'
miRNA:   3'- agCUCCGCCGGU--------------U-------CCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 49217 0.85 0.016066
Target:  5'- cCGAgGGCGGCCucGGCgGCGCGCAGUc -3'
miRNA:   3'- aGCU-CCGCCGGuuCCGgCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 11020 0.86 0.013927
Target:  5'- gCGAGGCGGCugucgcgCAAGaCCGCGCGCAGCa -3'
miRNA:   3'- aGCUCCGCCG-------GUUCcGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 17092 0.73 0.116003
Target:  5'- gUCGAcGCGGC--GGGCCGCgaggagguccaccGCGCGGCg -3'
miRNA:   3'- -AGCUcCGCCGguUCCGGCG-------------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 26531 0.73 0.125584
Target:  5'- cCGAcaagaccGGCGGCCAcuccgaagcGGCCGaCGCGCuGCg -3'
miRNA:   3'- aGCU-------CCGCCGGUu--------CCGGC-GCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 45058 0.7 0.185789
Target:  5'- gCGA-GCGGCCGauuccaGGGCaucacgCGCGCGCAGg -3'
miRNA:   3'- aGCUcCGCCGGU------UCCG------GCGCGCGUCg -5'
24004 5' -63 NC_005262.1 + 61159 0.71 0.176549
Target:  5'- aUCGcGGCGGCgGGcGaGCUgacggGCGCGCGGCg -3'
miRNA:   3'- -AGCuCCGCCGgUU-C-CGG-----CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 23370 0.71 0.176549
Target:  5'- gCGcGGCGGCgAAGGCCcgcaacgugaaGCGCcacaagGCGGCg -3'
miRNA:   3'- aGCuCCGCCGgUUCCGG-----------CGCG------CGUCG- -5'
24004 5' -63 NC_005262.1 + 49772 0.71 0.172085
Target:  5'- cCGAGGCuccGGCCGcuGCCGCGC-CGGa -3'
miRNA:   3'- aGCUCCG---CCGGUucCGGCGCGcGUCg -5'
24004 5' -63 NC_005262.1 + 43667 0.71 0.172085
Target:  5'- aCGuGGCGaccugaacgcaaGCCAagccGGGCCGaauuCGCGCGGCg -3'
miRNA:   3'- aGCuCCGC------------CGGU----UCCGGC----GCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 20594 0.71 0.163457
Target:  5'- gCGcGGCGcGCCGcaGGGCUGuUGCGUAGCc -3'
miRNA:   3'- aGCuCCGC-CGGU--UCCGGC-GCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 8012 0.71 0.163457
Target:  5'- -gGAGGCGGCaAAGGCCcuccggcucGCGUcaggacugacGCAGCg -3'
miRNA:   3'- agCUCCGCCGgUUCCGG---------CGCG----------CGUCG- -5'
24004 5' -63 NC_005262.1 + 5766 0.71 0.159291
Target:  5'- cUCGcGGCcauccggaaacaGGCCAucuuGcGCCGCGCGCAuGCa -3'
miRNA:   3'- -AGCuCCG------------CCGGUu---C-CGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 2667 0.71 0.159291
Target:  5'- cCG-GGCGGCguccuGGCCGC-CGUAGCa -3'
miRNA:   3'- aGCuCCGCCGguu--CCGGCGcGCGUCG- -5'
24004 5' -63 NC_005262.1 + 15587 0.72 0.147361
Target:  5'- -gGAGGCGcgcgcGCgCGAGGagCGCGUGCGGCa -3'
miRNA:   3'- agCUCCGC-----CG-GUUCCg-GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 5307 0.72 0.139866
Target:  5'- gUCGAGGCGGUCGGagcuGGCCG-GCaGgAGCu -3'
miRNA:   3'- -AGCUCCGCCGGUU----CCGGCgCG-CgUCG- -5'
24004 5' -63 NC_005262.1 + 57658 0.72 0.136251
Target:  5'- cUCGAucGGCGGCaCGAucgacuucucgcGcGCCGgGCGCGGCa -3'
miRNA:   3'- -AGCU--CCGCCG-GUU------------C-CGGCgCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 8299 0.73 0.132722
Target:  5'- gCGAGGCGGCCAagaAGGUgaagaaGauCGCAGCg -3'
miRNA:   3'- aGCUCCGCCGGU---UCCGg-----CgcGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.