miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 56879 0.66 0.389292
Target:  5'- cUCGAcGuCGGCCuucAGGCCG-GC-CAGCu -3'
miRNA:   3'- -AGCUcC-GCCGGu--UCCGGCgCGcGUCG- -5'
24004 5' -63 NC_005262.1 + 22327 0.67 0.332829
Target:  5'- gCGcAGGcCGGCCGgcguGGGCgGCGCGgCcgugAGCu -3'
miRNA:   3'- aGC-UCC-GCCGGU----UCCGgCGCGC-G----UCG- -5'
24004 5' -63 NC_005262.1 + 16383 0.67 0.32527
Target:  5'- gUCGAucGGUugcacGCCGcGaGCgGCGCGCAGCa -3'
miRNA:   3'- -AGCU--CCGc----CGGUuC-CGgCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 43938 0.84 0.019542
Target:  5'- cCGAGGUccugccGGCCAccGCCGCGCGCGGCc -3'
miRNA:   3'- aGCUCCG------CCGGUucCGGCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 12127 0.66 0.380851
Target:  5'- gUGAGGUcugccauGCCGGGGaCGCGCGCGa- -3'
miRNA:   3'- aGCUCCGc------CGGUUCCgGCGCGCGUcg -5'
24004 5' -63 NC_005262.1 + 48669 0.66 0.372533
Target:  5'- cCGAGGCGGCuCGcuucguucGGGUCGaGCaccuuGUAGCg -3'
miRNA:   3'- aGCUCCGCCG-GU--------UCCGGCgCG-----CGUCG- -5'
24004 5' -63 NC_005262.1 + 53428 0.66 0.372533
Target:  5'- uUCGc-GCGGUCGgcgAGGUagcggCGCGCGCGGUc -3'
miRNA:   3'- -AGCucCGCCGGU---UCCG-----GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 1246 0.66 0.372533
Target:  5'- gCGcAGGauGgCAAGcCCGCGCgGCAGCa -3'
miRNA:   3'- aGC-UCCgcCgGUUCcGGCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 18488 0.66 0.363527
Target:  5'- aUUGAGGCGcucggaaGCCGgugcGGGUCGUGCaaCGGCa -3'
miRNA:   3'- -AGCUCCGC-------CGGU----UCCGGCGCGc-GUCG- -5'
24004 5' -63 NC_005262.1 + 50406 0.66 0.34833
Target:  5'- gCGcGGCGGgCGcugcGGCCGgcuccucaaucCGCGCGGCc -3'
miRNA:   3'- aGCuCCGCCgGUu---CCGGC-----------GCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 32450 0.66 0.356271
Target:  5'- aUCGAagcGGaGGCCGuuGGCCGUGcCGUAGg -3'
miRNA:   3'- -AGCU---CCgCCGGUu-CCGGCGC-GCGUCg -5'
24004 5' -63 NC_005262.1 + 50172 0.66 0.364339
Target:  5'- gCGGcGCGGgUucGGUCG-GCGCAGCg -3'
miRNA:   3'- aGCUcCGCCgGuuCCGGCgCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 59218 0.66 0.389292
Target:  5'- gCGAcGCGGCCc-GGCCGguucgccucgGCGCGGUa -3'
miRNA:   3'- aGCUcCGCCGGuuCCGGCg---------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 61475 0.66 0.356271
Target:  5'- gCGAGGUcGUagUAGcGGCUGCGCaGCGGCu -3'
miRNA:   3'- aGCUCCGcCG--GUU-CCGGCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 12752 0.66 0.380851
Target:  5'- aCG-GGCGcaggguucGCCGcGcGCCGCGCGC-GCu -3'
miRNA:   3'- aGCuCCGC--------CGGUuC-CGGCGCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 59518 0.66 0.364339
Target:  5'- aUGAGGCcguaGGCCAgcuucAGGUCGaGCGUuGCg -3'
miRNA:   3'- aGCUCCG----CCGGU-----UCCGGCgCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 4418 0.66 0.34833
Target:  5'- cCGAuGGaCGGCCcgcGAGGCuCGC-CGUAGUc -3'
miRNA:   3'- aGCU-CC-GCCGG---UUCCG-GCGcGCGUCG- -5'
24004 5' -63 NC_005262.1 + 46474 0.67 0.330548
Target:  5'- aCGAGGCGcGCCuguucGGCCuugauugcguccucGCGUucagccuucGCAGCg -3'
miRNA:   3'- aGCUCCGC-CGGuu---CCGG--------------CGCG---------CGUCG- -5'
24004 5' -63 NC_005262.1 + 29762 0.66 0.380851
Target:  5'- uUCGcggguuGGGCGGgCugcgcGGgCGCGgGCGGCa -3'
miRNA:   3'- -AGC------UCCGCCgGuu---CCgGCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 51256 0.66 0.372533
Target:  5'- gUCGucGGCuGCCu--GCUGCGCGCucGGCg -3'
miRNA:   3'- -AGCu-CCGcCGGuucCGGCGCGCG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.