miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24004 5' -63 NC_005262.1 + 17081 0.67 0.32527
Target:  5'- aCGAGcGCGcGCUc-GGCCgGCG-GCAGCa -3'
miRNA:   3'- aGCUC-CGC-CGGuuCCGG-CGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 16383 0.67 0.32527
Target:  5'- gUCGAucGGUugcacGCCGcGaGCgGCGCGCAGCa -3'
miRNA:   3'- -AGCU--CCGc----CGGUuC-CGgCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 50172 0.66 0.364339
Target:  5'- gCGGcGCGGgUucGGUCG-GCGCAGCg -3'
miRNA:   3'- aGCUcCGCCgGuuCCGGCgCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 29762 0.66 0.380851
Target:  5'- uUCGcggguuGGGCGGgCugcgcGGgCGCGgGCGGCa -3'
miRNA:   3'- -AGC------UCCGCCgGuu---CCgGCGCgCGUCG- -5'
24004 5' -63 NC_005262.1 + 54209 0.68 0.289401
Target:  5'- gCGAGuaGGCgAGGgcGCCGUcgacgucgagGCGCAGCa -3'
miRNA:   3'- aGCUCcgCCGgUUC--CGGCG----------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 1505 0.67 0.303364
Target:  5'- aCGAaGCGGCCGcGGUCGUG-GCGGa -3'
miRNA:   3'- aGCUcCGCCGGUuCCGGCGCgCGUCg -5'
24004 5' -63 NC_005262.1 + 22327 0.67 0.332829
Target:  5'- gCGcAGGcCGGCCGgcguGGGCgGCGCGgCcgugAGCu -3'
miRNA:   3'- aGC-UCC-GCCGGU----UCCGgCGCGC-G----UCG- -5'
24004 5' -63 NC_005262.1 + 12752 0.66 0.380851
Target:  5'- aCG-GGCGcaggguucGCCGcGcGCCGCGCGC-GCu -3'
miRNA:   3'- aGCuCCGC--------CGGUuC-CGGCGCGCGuCG- -5'
24004 5' -63 NC_005262.1 + 49817 0.67 0.310538
Target:  5'- gUCGGuGCGGCUucGGCCGCcgguucgccGCcCGGCa -3'
miRNA:   3'- -AGCUcCGCCGGuuCCGGCG---------CGcGUCG- -5'
24004 5' -63 NC_005262.1 + 59218 0.66 0.389292
Target:  5'- gCGAcGCGGCCc-GGCCGguucgccucgGCGCGGUa -3'
miRNA:   3'- aGCUcCGCCGGuuCCGGCg---------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 46474 0.67 0.330548
Target:  5'- aCGAGGCGcGCCuguucGGCCuugauugcguccucGCGUucagccuucGCAGCg -3'
miRNA:   3'- aGCUCCGC-CGGuu---CCGG--------------CGCG---------CGUCG- -5'
24004 5' -63 NC_005262.1 + 12998 0.67 0.323027
Target:  5'- gCGcAGGUugucguguccagcaGGCCGGGGCUGaUGCGCAcgaGCg -3'
miRNA:   3'- aGC-UCCG--------------CCGGUUCCGGC-GCGCGU---CG- -5'
24004 5' -63 NC_005262.1 + 61475 0.66 0.356271
Target:  5'- gCGAGGUcGUagUAGcGGCUGCGCaGCGGCu -3'
miRNA:   3'- aGCUCCGcCG--GUU-CCGGCGCG-CGUCG- -5'
24004 5' -63 NC_005262.1 + 18488 0.66 0.363527
Target:  5'- aUUGAGGCGcucggaaGCCGgugcGGGUCGUGCaaCGGCa -3'
miRNA:   3'- -AGCUCCGC-------CGGU----UCCGGCGCGc-GUCG- -5'
24004 5' -63 NC_005262.1 + 53428 0.66 0.372533
Target:  5'- uUCGc-GCGGUCGgcgAGGUagcggCGCGCGCGGUc -3'
miRNA:   3'- -AGCucCGCCGGU---UCCG-----GCGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 12127 0.66 0.380851
Target:  5'- gUGAGGUcugccauGCCGGGGaCGCGCGCGa- -3'
miRNA:   3'- aGCUCCGc------CGGUUCCgGCGCGCGUcg -5'
24004 5' -63 NC_005262.1 + 5350 0.68 0.26941
Target:  5'- aCGAGGCauccGGCUucGAGGCauucaaucaGCGCGGCg -3'
miRNA:   3'- aGCUCCG----CCGG--UUCCGgcg------CGCGUCG- -5'
24004 5' -63 NC_005262.1 + 10802 0.68 0.282611
Target:  5'- gCGGGaGC-GCC--GGCCGCGUGCGcGCg -3'
miRNA:   3'- aGCUC-CGcCGGuuCCGGCGCGCGU-CG- -5'
24004 5' -63 NC_005262.1 + 16980 0.68 0.289401
Target:  5'- gCG-GGCGGUgCGGuguggugcGGCCcgGCGCGCGGCc -3'
miRNA:   3'- aGCuCCGCCG-GUU--------CCGG--CGCGCGUCG- -5'
24004 5' -63 NC_005262.1 + 25548 0.67 0.303364
Target:  5'- gCGA-GCGGCauc-GCCuCGCGCAGCg -3'
miRNA:   3'- aGCUcCGCCGguucCGGcGCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.