miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24005 3' -52.4 NC_005262.1 + 28770 0.66 0.919407
Target:  5'- uCGACC---GCGCCUUCCUCcaucaGGACCu -3'
miRNA:   3'- cGCUGGucaUGUGGAGGGAGc----UUUGG- -5'
24005 3' -52.4 NC_005262.1 + 19432 0.66 0.919407
Target:  5'- uGUGugCAGUACAUCgaagagcagugCCUcCGAGACa -3'
miRNA:   3'- -CGCugGUCAUGUGGa----------GGGaGCUUUGg -5'
24005 3' -52.4 NC_005262.1 + 12936 0.66 0.919407
Target:  5'- cGCGAagcUCGGcacgACGgUUCCCgCGAGGCCg -3'
miRNA:   3'- -CGCU---GGUCa---UGUgGAGGGaGCUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 60485 0.66 0.919407
Target:  5'- cGCGAUCAGggcgagACGCCgggCCgCgcggCGcAGGCCg -3'
miRNA:   3'- -CGCUGGUCa-----UGUGGa--GG-Ga---GC-UUUGG- -5'
24005 3' -52.4 NC_005262.1 + 14019 0.66 0.919407
Target:  5'- aGCGugCAGU-CGCUUggcggaCCCUgGAcGCCc -3'
miRNA:   3'- -CGCugGUCAuGUGGA------GGGAgCUuUGG- -5'
24005 3' -52.4 NC_005262.1 + 6309 0.66 0.919407
Target:  5'- uGCGcucGCCGGc-CGCCUCUCgUCGgcGCCc -3'
miRNA:   3'- -CGC---UGGUCauGUGGAGGG-AGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 61217 0.66 0.9188
Target:  5'- uGCG-CCAgcgcgucGUACACCgUCCCcuUCGucGCCc -3'
miRNA:   3'- -CGCuGGU-------CAUGUGG-AGGG--AGCuuUGG- -5'
24005 3' -52.4 NC_005262.1 + 54505 0.66 0.915725
Target:  5'- gGCGGCC--UGCGCCUCCg-CGAGcuugcgcacgacguuGCCc -3'
miRNA:   3'- -CGCUGGucAUGUGGAGGgaGCUU---------------UGG- -5'
24005 3' -52.4 NC_005262.1 + 47155 0.66 0.913215
Target:  5'- cGCGACCGGcgaggcgcGCACCacuUUCgUCGAcaagAACCa -3'
miRNA:   3'- -CGCUGGUCa-------UGUGG---AGGgAGCU----UUGG- -5'
24005 3' -52.4 NC_005262.1 + 33360 0.66 0.913215
Target:  5'- cGCGAUgCGGUACGCCUCgCggaUCGAcaggaAGCg -3'
miRNA:   3'- -CGCUG-GUCAUGUGGAGgG---AGCU-----UUGg -5'
24005 3' -52.4 NC_005262.1 + 14038 0.66 0.913215
Target:  5'- uGCGACCAGcggcuCAUCUUCUcCGGcaAGCCc -3'
miRNA:   3'- -CGCUGGUCau---GUGGAGGGaGCU--UUGG- -5'
24005 3' -52.4 NC_005262.1 + 56819 0.66 0.913215
Target:  5'- gGCGGCCAuGUcgaACGCCgacgCCUCGGAcacguCCu -3'
miRNA:   3'- -CGCUGGU-CA---UGUGGag--GGAGCUUu----GG- -5'
24005 3' -52.4 NC_005262.1 + 39417 0.66 0.913215
Target:  5'- -gGAUCGGUAUggggcgGCCUgCUCUCGGAuuACCu -3'
miRNA:   3'- cgCUGGUCAUG------UGGA-GGGAGCUU--UGG- -5'
24005 3' -52.4 NC_005262.1 + 28100 0.66 0.906752
Target:  5'- --uGCCGGUACAUCUUCCgcgUGAagugggucGACCu -3'
miRNA:   3'- cgcUGGUCAUGUGGAGGGa--GCU--------UUGG- -5'
24005 3' -52.4 NC_005262.1 + 26882 0.66 0.906752
Target:  5'- -aGGCCGG-GCGCCUCaagCGAAuccGCCa -3'
miRNA:   3'- cgCUGGUCaUGUGGAGggaGCUU---UGG- -5'
24005 3' -52.4 NC_005262.1 + 11099 0.66 0.900018
Target:  5'- cGCGA-CAGc-CGCCUCgCUCGucAGCCg -3'
miRNA:   3'- -CGCUgGUCauGUGGAGgGAGCu-UUGG- -5'
24005 3' -52.4 NC_005262.1 + 5274 0.66 0.900018
Target:  5'- cGCG-CCGGccGCGCCcgcgCCCgCGAcGCCg -3'
miRNA:   3'- -CGCuGGUCa-UGUGGa---GGGaGCUuUGG- -5'
24005 3' -52.4 NC_005262.1 + 21432 0.66 0.900018
Target:  5'- cGCGGCC--UugGCCg-CCUCGAucGCCu -3'
miRNA:   3'- -CGCUGGucAugUGGagGGAGCUu-UGG- -5'
24005 3' -52.4 NC_005262.1 + 42233 0.66 0.895849
Target:  5'- cGCGACCGGgcccgGCGCCgcguagaccggcuuaUCCC---AAGCCa -3'
miRNA:   3'- -CGCUGGUCa----UGUGG---------------AGGGagcUUUGG- -5'
24005 3' -52.4 NC_005262.1 + 61493 0.66 0.893017
Target:  5'- cGCGGCCGGaACAgucggaaaugaUCUCgCUCGAccggauGACCc -3'
miRNA:   3'- -CGCUGGUCaUGU-----------GGAGgGAGCU------UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.